Result of FASTA (omim) for
pF1KB8204
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8204, 470 aa
1>>>pF1KB8204 470 - 470 aa - 470 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.2247+/-0.000406; mu= -2.2842+/- 0.025
mean_var=300.8966+/-61.849, 0's: 0 Z-trim(121.4): 12 B-trim: 725 in 1/55
Lambda= 0.073938
statistics sampled from 38051 (38063) to 38051 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.446), width: 16
Scan time: 7.560
The best scores are: opt bits E(85289)
NP_003069 (OMIM: 601737) SWI/SNF-related matrix-as ( 470) 3176 352.1 2e-96
NP_001003802 (OMIM: 601737) SWI/SNF-related matrix ( 470) 3176 352.1 2e-96
NP_001003801 (OMIM: 601737) SWI/SNF-related matrix ( 483) 3082 342.0 2.1e-93
XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 381) 2535 283.6 6.4e-76
NP_003067 (OMIM: 601735) SWI/SNF-related matrix-as ( 515) 2363 265.4 2.7e-70
XP_016868045 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 318) 1954 221.6 2.5e-57
NP_620710 (OMIM: 601735) SWI/SNF-related matrix-as ( 474) 1866 212.3 2.3e-54
NP_001091896 (OMIM: 601736) SWI/SNF-related matrix ( 531) 1855 211.2 5.6e-54
NP_001317369 (OMIM: 601736) SWI/SNF-related matrix ( 483) 1849 210.5 8.2e-54
NP_001317368 (OMIM: 601736) SWI/SNF-related matrix ( 456) 1817 207.1 8.3e-53
XP_005269164 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 474) 1669 191.3 4.9e-48
XP_011536997 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 265) 949 114.3 4.1e-25
>>NP_003069 (OMIM: 601737) SWI/SNF-related matrix-associ (470 aa)
initn: 3176 init1: 3176 opt: 3176 Z-score: 1852.3 bits: 352.1 E(85289): 2e-96
Smith-Waterman score: 3176; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)
10 20 30 40 50 60
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
370 380 390 400 410 420
430 440 450 460 470
pF1KB8 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
430 440 450 460 470
>>NP_001003802 (OMIM: 601737) SWI/SNF-related matrix-ass (470 aa)
initn: 3176 init1: 3176 opt: 3176 Z-score: 1852.3 bits: 352.1 E(85289): 2e-96
Smith-Waterman score: 3176; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)
10 20 30 40 50 60
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
370 380 390 400 410 420
430 440 450 460 470
pF1KB8 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
430 440 450 460 470
>>NP_001003801 (OMIM: 601737) SWI/SNF-related matrix-ass (483 aa)
initn: 3082 init1: 3082 opt: 3082 Z-score: 1797.9 bits: 342.0 E(85289): 2.1e-93
Smith-Waterman score: 3082; 100.0% identity (100.0% similar) in 457 aa overlap (14-470:27-483)
10 20 30 40
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL
::::::::::::::::::::::::::::::::::
NP_001 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 APAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 AYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB8 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB8 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB8 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
430 440 450 460 470 480
470
pF1KB8 RNT
:::
NP_001 RNT
>>XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-related (381 aa)
initn: 2535 init1: 2535 opt: 2535 Z-score: 1484.0 bits: 283.6 E(85289): 6.4e-76
Smith-Waterman score: 2535; 100.0% identity (100.0% similar) in 381 aa overlap (90-470:1-381)
60 70 80 90 100 110
pF1KB8 APPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKL
::::::::::::::::::::::::::::::
XP_011 MADKILPQRIRELVPESQAYMDLLAFERKL
10 20 30
120 130 140 150 160 170
pF1KB8 DQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLD
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB8 DPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTL
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB8 LLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQ
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB8 QIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQM
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB8 SSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLK
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB8 VMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
340 350 360 370 380
>>NP_003067 (OMIM: 601735) SWI/SNF-related matrix-associ (515 aa)
initn: 2374 init1: 1619 opt: 2363 Z-score: 1383.0 bits: 265.4 E(85289): 2.7e-70
Smith-Waterman score: 2363; 74.1% identity (88.0% similar) in 475 aa overlap (3-470:54-515)
10 20 30
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
:: .: :::: :.:: :: :::
NP_003 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
30 40 50 60 70
40 50 60 70 80 90
pF1KB8 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
:: : :.:.:::::: .::. .::: : : : : : : : : . :...::..::::
NP_003 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
:::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
NP_003 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
140 150 160 170 180 190
160 170 180 190 200
pF1KB8 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
:::: ::::..:..:::::::::.::.: .:::::::::::::::::::::::
NP_003 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB8 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
NP_003 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
260 270 280 290 300 310
270 280 290 300 310 320
pF1KB8 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
.: .:.::::::.::..::: :..:.. :::.::::. :.::::::::: :::.::.:
NP_003 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
320 330 340 350 360 370
330 340 350 360 370 380
pF1KB8 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
:.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.
NP_003 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET
380 390 400 410 420 430
390 400 410 420 430 440
pF1KB8 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
::::: ::.:::::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::
NP_003 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEA
440 450 460 470 480 490
450 460 470
pF1KB8 VSRYFYCKIQQRRQELEQSLVVRNT
: :::: :.:::::::::.: .:::
NP_003 VCRYFYSKVQQRRQELEQALGIRNT
500 510
>>XP_016868045 (OMIM: 601737) PREDICTED: SWI/SNF-related (318 aa)
initn: 1944 init1: 1944 opt: 1954 Z-score: 1150.1 bits: 221.6 E(85289): 2.5e-57
Smith-Waterman score: 1954; 93.4% identity (94.7% similar) in 318 aa overlap (157-470:5-318)
130 140 150 160 170 180
pF1KB8 RVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSI----ASWELRVEGKLLDDPS
: : :: .:: . : .. ::
XP_016 MLRIPTAALPPGSYGWRGSSWMMYVPAQ----PS
10 20 30
190 200 210 220 230 240
pF1KB8 KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLM
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB8 LDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB8 DCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSF
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB8 LLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT
220 230 240 250 260 270
430 440 450 460 470
pF1KB8 DVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
280 290 300 310
>>NP_620710 (OMIM: 601735) SWI/SNF-related matrix-associ (474 aa)
initn: 1877 init1: 1113 opt: 1866 Z-score: 1097.0 bits: 212.3 E(85289): 2.3e-54
Smith-Waterman score: 2061; 67.8% identity (80.0% similar) in 475 aa overlap (3-470:54-474)
10 20 30
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
:: .: :::: :.:: :: :::
NP_620 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
30 40 50 60 70
40 50 60 70 80 90
pF1KB8 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
:: : :.:.:::::: .::. .::: : : : : : : : : . :...::..::::
NP_620 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
:::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
NP_620 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
140 150 160 170 180 190
160 170 180 190 200
pF1KB8 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
:::: ::::..:..:::::::::.::.: .:::::::::::::::::::::::
NP_620 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB8 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
NP_620 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
260 270 280 290 300 310
270 280 290 300 310 320
pF1KB8 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
.: .:.::::::.::..::: :..:.. :::.::::. :.::::::::: :::.::.:
NP_620 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
320 330 340 350 360 370
330 340 350 360 370 380
pF1KB8 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
:.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:
NP_620 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNK-------
380 390 400 410 420
390 400 410 420 430 440
pF1KB8 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
.::::.:::::::::::: :::.:::
NP_620 ----------------------------------TMTDVVGNPEEERRAEFYFQPWAQEA
430 440
450 460 470
pF1KB8 VSRYFYCKIQQRRQELEQSLVVRNT
: :::: :.:::::::::.: .:::
NP_620 VCRYFYSKVQQRRQELEQALGIRNT
450 460 470
>>NP_001091896 (OMIM: 601736) SWI/SNF-related matrix-ass (531 aa)
initn: 2197 init1: 1676 opt: 1855 Z-score: 1090.0 bits: 211.2 E(85289): 5.6e-54
Smith-Waterman score: 2259; 70.4% identity (84.6% similar) in 480 aa overlap (4-470:63-531)
10 20 30
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP
: : . ::::: : ::: : .:::
NP_001 GPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB8 -GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
:::. .. .:::. :. :.: ::: : ::: : ::. :. :::::::
NP_001 AGSPFGAAAPLRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMAD
100 110 120 130 140
100 110 120 130 140 150
pF1KB8 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
:.::::::::::::::::::::::::::::: :::..::::.:.:. ::::::.::::::
NP_001 KVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTF
150 160 170 180 190 200
160 170 180 190 200
pF1KB8 NPAKPDAEDSDGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
.:.: .. :: :. .::::::::::::::::::::::::::::::::::
NP_001 SPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB8 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLL
:.::::::::::::: :::::::::::::::::.:.::::::::.::::.::::::::::
NP_001 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL
270 280 290 300 310 320
270 280 290 300 310 320
pF1KB8 GLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALL
:.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..::
NP_001 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL
330 340 350 360 370 380
330 340 350 360 370 380
pF1KB8 LPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIH
::::::::::::::.::::::::::::::..:::.:::.:: ::.:::::..:: :::
NP_001 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH
390 400 410 420 430 440
390 400 410 420 430 440
pF1KB8 ETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQP
:::::::::: ::::::::: ::. ..:. :::: ::::..::: ::::::::: :::::
NP_001 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQP
450 460 470 480 490 500
450 460 470
pF1KB8 WSQEAVSRYFYCKIQQRRQELEQSLVVRNT
:.::::.:... :.::::::::: : .: :
NP_001 WAQEAVGRHIFAKVQQRRQELEQVLGIRLT
510 520 530
>>NP_001317369 (OMIM: 601736) SWI/SNF-related matrix-ass (483 aa)
initn: 2197 init1: 1676 opt: 1849 Z-score: 1087.1 bits: 210.5 E(85289): 8.2e-54
Smith-Waterman score: 2253; 71.3% identity (85.6% similar) in 471 aa overlap (13-470:24-483)
10 20 30 40
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLA
::::: : ::: : .::: :::. .. .:::.
NP_001 MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQA
:. :.: ::: : ::: : ::. :. ::::::::.::::::::::::::
NP_001 PTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMADKVLPQRIRELVPESQA
70 80 90 100 110
110 120 130 140 150 160
pF1KB8 YMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS---
::::::::::::::: :::..::::.:.:. ::::::.::::::.:.: .. :: :.
NP_001 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGT
120 130 140 150 160
170 180 190 200 210
pF1KB8 ---------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT
.:::::::::::::::::::::::::::::::::::.:::::::::::::
NP_001 PGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRM
170 180 190 200 210 220
220 230 240 250 260 270
pF1KB8 PTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQ
:::::::::::::::::.:.::::::::.::::.:::::::::::.:::.:.::.::::
NP_001 PTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWL
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB8 YVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDP
:.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: ::::::::::::::
NP_001 YIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDP
290 300 310 320 330 340
340 350 360 370 380 390
pF1KB8 SDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFM
.::::::::::::::..:::.:::.:: ::.:::::..:: ::::::::::::: :::::
NP_001 NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFM
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB8 LSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQ
:::: ::. ..:. :::: ::::..::: ::::::::: ::::::.::::.:... :.::
NP_001 LSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQ
410 420 430 440 450 460
460 470
pF1KB8 RRQELEQSLVVRNT
::::::: : .: :
NP_001 RRQELEQVLGIRLT
470 480
>>NP_001317368 (OMIM: 601736) SWI/SNF-related matrix-ass (456 aa)
initn: 2215 init1: 1676 opt: 1817 Z-score: 1069.0 bits: 207.1 E(85289): 8.3e-53
Smith-Waterman score: 2221; 71.1% identity (85.4% similar) in 467 aa overlap (17-470:1-456)
10 20 30 40 50
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRA
: : ::: : .::: :::. .. .:::. :. :.: :::
NP_001 MSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL
10 20 30 40
60 70 80 90 100 110
pF1KB8 APPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKL
: ::: : ::. :. ::::::::.:::::::::::::::::::::::::
NP_001 LVP----QAQ------PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKL
50 60 70 80 90
120 130 140 150 160
pF1KB8 DQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IA
:::: :::..::::.:.:. ::::::.::::::.:.: .. :: :. .:
NP_001 DQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVA
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
::::::::::::::::::::::::::::::::::.::::::::::::: :::::::::::
NP_001 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQV
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB8 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
::::::.:.::::::::.::::.:::::::::::.:::.:.::.:::: :.: :.:::.:
NP_001 KRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGH
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB8 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
..:::: ..::.:::.: ::.:::::..:..:: ::::::::::::::.::::::::::
NP_001 EREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDI
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB8 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
::::..:::.:::.:: ::.:::::..:: ::::::::::::: ::::::::: ::. ..
NP_001 DVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFI
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB8 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
:. :::: ::::..::: ::::::::: ::::::.::::.:... :.::::::::: : .
NP_001 QEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGI
400 410 420 430 440 450
470
pF1KB8 RNT
: :
NP_001 RLT
470 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:31:48 2016 done: Fri Nov 4 10:31:49 2016
Total Scan time: 7.560 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]