FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8214, 257 aa
  1>>>pF1KB8214 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8654+/-0.000748; mu= 9.3683+/- 0.045
 mean_var=143.8275+/-30.431, 0's: 0 Z-trim(113.9): 177  B-trim: 1496 in 2/48
 Lambda= 0.106943
 statistics sampled from 14271 (14469) to 14271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.444), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS1921.2 EMX1 gene_id:2016|Hs108|chr2            ( 290) 1751 280.9 6.7e-76
CCDS7601.1 EMX2 gene_id:2018|Hs108|chr10           ( 252)  897 149.1 2.8e-36


>>CCDS1921.2 EMX1 gene_id:2016|Hs108|chr2                 (290 aa)
 initn: 1751 init1: 1751 opt: 1751  Z-score: 1476.1  bits: 280.9 E(32554): 6.7e-76
Smith-Waterman score: 1751; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:34-290)

                                             10        20        30
pF1KB8                               MFQPAAKRGFTIESLVAKDGGTGGGTGGGG
                                     ::::::::::::::::::::::::::::::
CCDS19 AGCTPRKAAAPGRGALPRARLPRTAPAAATMFQPAAKRGFTIESLVAKDGGTGGGTGGGG
            10        20        30        40        50        60   

               40        50        60        70        80        90
pF1KB8 AGSHLLAAAASEEPLRPTALNYPHPSAAEAAFVSGFPAAAAAGAGRSLYGGPELVFPEAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 AGSHLLAAAASEEPLRPTALNYPHPSAAEAAFVSGFPAAAAAGAGRSLYGGPELVFPEAM
            70        80        90       100       110       120   

              100       110       120       130       140       150
pF1KB8 NHPALTVHPAHQLGASPLQPPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASDVPQDGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 NHPALTVHPAHQLGASPLQPPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASDVPQDGLL
           130       140       150       160       170       180   

              160       170       180       190       200       210
pF1KB8 LHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNR
           190       200       210       220       230       240   

              220       230       240       250       
pF1KB8 RTKYKRQKLEEEGPESEQKKKGSHHINRWRIATKQANGEDIDVTSND
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 RTKYKRQKLEEEGPESEQKKKGSHHINRWRIATKQANGEDIDVTSND
           250       260       270       280       290

>>CCDS7601.1 EMX2 gene_id:2018|Hs108|chr10                (252 aa)
 initn: 940 init1: 664 opt: 897  Z-score: 764.8  bits: 149.1 E(32554): 2.8e-36
Smith-Waterman score: 1043; 62.9% identity (80.9% similar) in 267 aa overlap (1-257:1-252)

               10        20        30        40        50        60
pF1KB8 MFQPAAKRGFTIESLVAKDGGTGGGTGGGGAGSHLLAAAASEEPLRPTALNYPHPSAAEA
       ::::: :: ::::::::::.               : :. ::.:.::.::.: . :  . 
CCDS76 MFQPAPKRCFTIESLVAKDSP--------------LPASRSEDPIRPAALSYANSSPINP
               10        20                      30        40      

               70        80        90          100             110 
pF1KB8 AFVSGFPAAAAAGAGRSLYGGPELVFPEAMNHP---ALTVHPA---HQLGASPL---QPP
        :..:: .::::.:::..:..:.::: ::..::   :. :::.   : :.: ::   . :
CCDS76 -FLNGFHSAAAAAAGRGVYSNPDLVFAEAVSHPPNPAVPVHPVPPPHALAAHPLPSSHSP
          50        60        70        80        90       100     

             120       130        140       150       160       170
pF1KB8 HSFFGAQHRDPLHFYPWVL-RNRFFGHRFQASDVPQDGLLLHGPFARKPKRIRTAFSPSQ
       : .:..:.:::  ::::.. : :..:::::..:.  ...:::. .:::::::::::::::
CCDS76 HPLFASQQRDPSTFYPWLIHRYRYLGHRFQGNDTSPESFLLHNALARKPKRIRTAFSPSQ
         110       120       130       140       150       160     

              180       190       200       210       220       230
pF1KB8 LLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKLEEEGPESEQKK
       :::::.::::::::::::::::: ::::.::::::::::::::.::::::::: .:.:::
CCDS76 LLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQKLEEEGSDSQQKK
         170       180       190       200       210       220     

              240       250       
pF1KB8 KGSHHINRWRIATKQANGEDIDVTSND
       ::.:::::::::::::. :.:::::.:
CCDS76 KGTHHINRWRIATKQASPEEIDVTSDD
         230       240       250  




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:38:17 2016 done: Fri Nov  4 10:38:17 2016
 Total Scan time:  2.070 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]