FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8215, 140 aa
  1>>>pF1KB8215 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6353+/-0.000665; mu= 10.3901+/- 0.040
 mean_var=85.6618+/-17.335, 0's: 0 Z-trim(112.5): 135  B-trim: 263 in 2/50
 Lambda= 0.138574
 statistics sampled from 13049 (13223) to 13049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.406), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS14400.1 PDZD11 gene_id:51248|Hs108|chrX        ( 140)  965 201.7 1.2e-52


>>CCDS14400.1 PDZD11 gene_id:51248|Hs108|chrX             (140 aa)
 initn: 965 init1: 965 opt: 965  Z-score: 1058.3  bits: 201.7 E(32554): 1.2e-52
Smith-Waterman score: 965; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MDSRIPYDDYPVVFLPAYENPPAWIPPHERVHHPDYNNELTQFLPRTITLKKPPGAQLGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDSRIPYDDYPVVFLPAYENPPAWIPPHERVHHPDYNNELTQFLPRTITLKKPPGAQLGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREI
               70        80        90       100       110       120

              130       140
pF1KB8 SMRVRFFPYNYHRQKERTVH
       ::::::::::::::::::::
CCDS14 SMRVRFFPYNYHRQKERTVH
              130       140




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:00:29 2016 done: Fri Nov  4 22:00:29 2016
 Total Scan time:  1.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]