FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8217, 293 aa
  1>>>pF1KB8217 293 - 293 aa - 293 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5638+/-0.000751; mu= 11.6035+/- 0.045
 mean_var=122.0876+/-24.510, 0's: 0 Z-trim(113.5): 3  B-trim: 536 in 1/51
 Lambda= 0.116075
 statistics sampled from 14133 (14136) to 14133 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.434), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS32345.1 MPG gene_id:4350|Hs108|chr16           ( 293) 2008 346.5 1.4e-95
CCDS32346.1 MPG gene_id:4350|Hs108|chr16           ( 298) 1962 338.8 2.9e-93
CCDS42087.1 MPG gene_id:4350|Hs108|chr16           ( 281) 1919 331.6 4.1e-91


>>CCDS32345.1 MPG gene_id:4350|Hs108|chr16                (293 aa)
 initn: 2008 init1: 2008 opt: 2008  Z-score: 1829.6  bits: 346.5 E(32554): 1.4e-95
Smith-Waterman score: 2008; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB8 MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB8 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
              250       260       270       280       290   

>>CCDS32346.1 MPG gene_id:4350|Hs108|chr16                (298 aa)
 initn: 1962 init1: 1962 opt: 1962  Z-score: 1787.8  bits: 338.8 E(32554): 2.9e-93
Smith-Waterman score: 1962; 97.6% identity (98.6% similar) in 293 aa overlap (1-293:6-298)

                    10        20        30        40        50     
pF1KB8      MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRER
            .  ..  ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVTPALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRER
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB8 CLGPPTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CLGPPTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGR
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB8 IVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVL
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB8 LRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE
              190       200       210       220       230       240

         240       250       260       270       280       290   
pF1KB8 AVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
              250       260       270       280       290        

>>CCDS42087.1 MPG gene_id:4350|Hs108|chr16                (281 aa)
 initn: 1919 init1: 1919 opt: 1919  Z-score: 1749.3  bits: 331.6 E(32554): 4.1e-91
Smith-Waterman score: 1919; 100.0% identity (100.0% similar) in 281 aa overlap (13-293:1-281)

               10        20        30        40        50        60
pF1KB8 MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42             MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
                           10        20        30        40        

               70        80        90       100       110       120
pF1KB8 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KB8 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KB8 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
      170       180       190       200       210       220        

              250       260       270       280       290   
pF1KB8 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
      230       240       250       260       270       280 




293 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:30:47 2016 done: Sat Nov  5 00:30:48 2016
 Total Scan time:  2.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]