FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8217, 293 aa
  1>>>pF1KB8217 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7976+/-0.000299; mu= 9.9645+/- 0.019
 mean_var=119.9404+/-24.267, 0's: 0 Z-trim(120.8): 3  B-trim: 1704 in 1/57
 Lambda= 0.117109
 statistics sampled from 36548 (36551) to 36548 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.429), width:  16
 Scan time:  7.160

The best scores are:                                      opt bits E(85289)
NP_001015052 (OMIM: 156565) DNA-3-methyladenine gl ( 293) 2008 349.5 4.5e-96
NP_002425 (OMIM: 156565) DNA-3-methyladenine glyco ( 298) 1962 341.7   1e-93
NP_001015054 (OMIM: 156565) DNA-3-methyladenine gl ( 281) 1919 334.4 1.5e-91


>>NP_001015052 (OMIM: 156565) DNA-3-methyladenine glycos  (293 aa)
 initn: 2008 init1: 2008 opt: 2008  Z-score: 1845.8  bits: 349.5 E(85289): 4.5e-96
Smith-Waterman score: 2008; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB8 MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB8 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
              250       260       270       280       290   

>>NP_002425 (OMIM: 156565) DNA-3-methyladenine glycosyla  (298 aa)
 initn: 1962 init1: 1962 opt: 1962  Z-score: 1803.6  bits: 341.7 E(85289): 1e-93
Smith-Waterman score: 1962; 97.6% identity (98.6% similar) in 293 aa overlap (1-293:6-298)

                    10        20        30        40        50     
pF1KB8      MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRER
            .  ..  ::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVTPALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRER
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB8 CLGPPTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CLGPPTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGR
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB8 IVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVL
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB8 LRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE
              190       200       210       220       230       240

         240       250       260       270       280       290   
pF1KB8 AVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
              250       260       270       280       290        

>>NP_001015054 (OMIM: 156565) DNA-3-methyladenine glycos  (281 aa)
 initn: 1919 init1: 1919 opt: 1919  Z-score: 1764.7  bits: 334.4 E(85289): 1.5e-91
Smith-Waterman score: 1919; 100.0% identity (100.0% similar) in 281 aa overlap (13-293:1-281)

               10        20        30        40        50        60
pF1KB8 MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
                   ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001             MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
                           10        20        30        40        

               70        80        90       100       110       120
pF1KB8 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KB8 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KB8 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
      170       180       190       200       210       220        

              250       260       270       280       290   
pF1KB8 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
      230       240       250       260       270       280 




293 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:30:48 2016 done: Sat Nov  5 00:30:49 2016
 Total Scan time:  7.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]