FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8224, 253 aa
  1>>>pF1KB8224 253 - 253 aa - 253 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7883+/-0.00076; mu= 2.1601+/- 0.046
 mean_var=219.8157+/-43.613, 0's: 0 Z-trim(117.6): 2  B-trim: 106 in 1/53
 Lambda= 0.086506
 statistics sampled from 18412 (18414) to 18412 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.566), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS12878.1 TFPT gene_id:29844|Hs108|chr19         ( 253) 1702 223.7 9.6e-59
CCDS82396.1 TFPT gene_id:29844|Hs108|chr19         ( 244) 1645 216.6 1.3e-56


>>CCDS12878.1 TFPT gene_id:29844|Hs108|chr19              (253 aa)
 initn: 1702 init1: 1702 opt: 1702  Z-score: 1168.2  bits: 223.7 E(32554): 9.6e-59
Smith-Waterman score: 1702; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KB8 MELEQREGTMAAVGFEEFSAPPGSELALPPLFGGHILESELETEVEFVSGGLGGSGLRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MELEQREGTMAAVGFEEFSAPPGSELALPPLFGGHILESELETEVEFVSGGLGGSGLRER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DEEEEAARGRRRRQRELNRRKYQALGRRCREIEQVNERVLNRLHQVQRITRRLQQERRFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DEEEEAARGRRRRQRELNRRKYQALGRRCREIEQVNERVLNRLHQVQRITRRLQQERRFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MRVLDSYGDDYRASQFTIVLEDEGSQGTDAPTPGNAENEPPEKETLSPPRRTPAPPEPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MRVLDSYGDDYRASQFTIVLEDEGSQGTDAPTPGNAENEPPEKETLSPPRRTPAPPEPGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PAPGEGPSGRKRRRVPRDGRRAGNALTPELAPVQIKVEEDFGFEADEALDSSWVSRGPDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PAPGEGPSGRKRRRVPRDGRRAGNALTPELAPVQIKVEEDFGFEADEALDSSWVSRGPDK
              190       200       210       220       230       240

              250   
pF1KB8 LLPYPTLASPASD
       :::::::::::::
CCDS12 LLPYPTLASPASD
              250   

>>CCDS82396.1 TFPT gene_id:29844|Hs108|chr19              (244 aa)
 initn: 1645 init1: 1645 opt: 1645  Z-score: 1129.9  bits: 216.6 E(32554): 1.3e-56
Smith-Waterman score: 1645; 100.0% identity (100.0% similar) in 244 aa overlap (10-253:1-244)

               10        20        30        40        50        60
pF1KB8 MELEQREGTMAAVGFEEFSAPPGSELALPPLFGGHILESELETEVEFVSGGLGGSGLRER
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82          MAAVGFEEFSAPPGSELALPPLFGGHILESELETEVEFVSGGLGGSGLRER
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB8 DEEEEAARGRRRRQRELNRRKYQALGRRCREIEQVNERVLNRLHQVQRITRRLQQERRFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DEEEEAARGRRRRQRELNRRKYQALGRRCREIEQVNERVLNRLHQVQRITRRLQQERRFL
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB8 MRVLDSYGDDYRASQFTIVLEDEGSQGTDAPTPGNAENEPPEKETLSPPRRTPAPPEPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MRVLDSYGDDYRASQFTIVLEDEGSQGTDAPTPGNAENEPPEKETLSPPRRTPAPPEPGS
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB8 PAPGEGPSGRKRRRVPRDGRRAGNALTPELAPVQIKVEEDFGFEADEALDSSWVSRGPDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PAPGEGPSGRKRRRVPRDGRRAGNALTPELAPVQIKVEEDFGFEADEALDSSWVSRGPDK
             180       190       200       210       220       230 

              250   
pF1KB8 LLPYPTLASPASD
       :::::::::::::
CCDS82 LLPYPTLASPASD
             240    




253 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:43:11 2016 done: Fri Nov  4 10:43:12 2016
 Total Scan time:  2.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]