FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8229, 168 aa
  1>>>pF1KB8229 168 - 168 aa - 168 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7635+/-0.00062; mu= 7.2752+/- 0.037
 mean_var=117.6083+/-23.827, 0's: 0 Z-trim(116.1): 8  B-trim: 884 in 1/51
 Lambda= 0.118265
 statistics sampled from 16646 (16653) to 16646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.512), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS8065.1 BAD gene_id:572|Hs108|chr11             ( 168) 1183 211.3 2.3e-55


>>CCDS8065.1 BAD gene_id:572|Hs108|chr11                  (168 aa)
 initn: 1183 init1: 1183 opt: 1183  Z-score: 1107.4  bits: 211.3 E(32554): 2.3e-55
Smith-Waterman score: 1183; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KB8 MFQIPEFEPSEQEDSSSAERGLGPSPAGDGPSGSGKHHRQAPGLLWDASHQQEQPTSSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MFQIPEFEPSEQEDSSSAERGLGPSPAGDGPSGSGKHHRQAPGLLWDASHQQEQPTSSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HGGAGAVEIRSRHSSYPAGTEDDEGMGEEPSPFRGRSRSAPPNLWAAQRYGRELRRMSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 HGGAGAVEIRSRHSSYPAGTEDDEGMGEEPSPFRGRSRSAPPNLWAAQRYGRELRRMSDE
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 FVDSFKKGLPRPKSAGTATQMRQSSSWTRVFQSWWDRNLGRGSSAPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 FVDSFKKGLPRPKSAGTATQMRQSSSWTRVFQSWWDRNLGRGSSAPSQ
              130       140       150       160        




168 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:46:40 2016 done: Fri Nov  4 10:46:40 2016
 Total Scan time:  1.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]