FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8229, 168 aa
  1>>>pF1KB8229 168 - 168 aa - 168 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0587+/-0.00026; mu= 5.3916+/- 0.016
 mean_var=121.8361+/-24.409, 0's: 0 Z-trim(123.7): 21  B-trim: 500 in 1/54
 Lambda= 0.116195
 statistics sampled from 43846 (43867) to 43846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.514), width:  16
 Scan time:  5.280

The best scores are:                                      opt bits E(85289)
NP_116784 (OMIM: 603167) bcl2-associated agonist o ( 168) 1183 207.9 6.2e-54
NP_004313 (OMIM: 603167) bcl2-associated agonist o ( 168) 1183 207.9 6.2e-54


>>NP_116784 (OMIM: 603167) bcl2-associated agonist of ce  (168 aa)
 initn: 1183 init1: 1183 opt: 1183  Z-score: 1089.3  bits: 207.9 E(85289): 6.2e-54
Smith-Waterman score: 1183; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KB8 MFQIPEFEPSEQEDSSSAERGLGPSPAGDGPSGSGKHHRQAPGLLWDASHQQEQPTSSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MFQIPEFEPSEQEDSSSAERGLGPSPAGDGPSGSGKHHRQAPGLLWDASHQQEQPTSSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HGGAGAVEIRSRHSSYPAGTEDDEGMGEEPSPFRGRSRSAPPNLWAAQRYGRELRRMSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 HGGAGAVEIRSRHSSYPAGTEDDEGMGEEPSPFRGRSRSAPPNLWAAQRYGRELRRMSDE
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 FVDSFKKGLPRPKSAGTATQMRQSSSWTRVFQSWWDRNLGRGSSAPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 FVDSFKKGLPRPKSAGTATQMRQSSSWTRVFQSWWDRNLGRGSSAPSQ
              130       140       150       160        

>>NP_004313 (OMIM: 603167) bcl2-associated agonist of ce  (168 aa)
 initn: 1183 init1: 1183 opt: 1183  Z-score: 1089.3  bits: 207.9 E(85289): 6.2e-54
Smith-Waterman score: 1183; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KB8 MFQIPEFEPSEQEDSSSAERGLGPSPAGDGPSGSGKHHRQAPGLLWDASHQQEQPTSSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MFQIPEFEPSEQEDSSSAERGLGPSPAGDGPSGSGKHHRQAPGLLWDASHQQEQPTSSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HGGAGAVEIRSRHSSYPAGTEDDEGMGEEPSPFRGRSRSAPPNLWAAQRYGRELRRMSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HGGAGAVEIRSRHSSYPAGTEDDEGMGEEPSPFRGRSRSAPPNLWAAQRYGRELRRMSDE
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 FVDSFKKGLPRPKSAGTATQMRQSSSWTRVFQSWWDRNLGRGSSAPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FVDSFKKGLPRPKSAGTATQMRQSSSWTRVFQSWWDRNLGRGSSAPSQ
              130       140       150       160        




168 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:46:40 2016 done: Fri Nov  4 10:46:41 2016
 Total Scan time:  5.280 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]