FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8232, 316 aa
  1>>>pF1KB8232 316 - 316 aa - 316 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3062+/-0.000884; mu= 15.5133+/- 0.054
 mean_var=58.2006+/-11.554, 0's: 0 Z-trim(105.5): 27  B-trim: 174 in 1/53
 Lambda= 0.168117
 statistics sampled from 8445 (8458) to 8445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.26), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS715.1 GTF2B gene_id:2959|Hs108|chr1            ( 316) 2081 512.9 1.3e-145
CCDS10001.1 BRF1 gene_id:2972|Hs108|chr14          ( 677)  246 68.0 2.4e-11


>>CCDS715.1 GTF2B gene_id:2959|Hs108|chr1                 (316 aa)
 initn: 2081 init1: 2081 opt: 2081  Z-score: 2727.9  bits: 512.9 E(32554): 1.3e-145
Smith-Waterman score: 2081; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KB8 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 ITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 CAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 ELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLF
              250       260       270       280       290       300

              310      
pF1KB8 PTDFKFDTPVDKLPQL
       ::::::::::::::::
CCDS71 PTDFKFDTPVDKLPQL
              310      

>>CCDS10001.1 BRF1 gene_id:2972|Hs108|chr14               (677 aa)
 initn: 259 init1: 141 opt: 246  Z-score: 317.3  bits: 68.0 E(32554): 2.4e-11
Smith-Waterman score: 261; 23.8% identity (55.4% similar) in 294 aa overlap (26-313:17-275)

               10        20        30        40        50        60
pF1KB8 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA
                                :   :: .:  :: :. : .:              
CCDS10          MTGRVCRGCGGTDIELDAARGDAVCTACGSVLEDNII--------------
                        10        20        30                     

               70        80           90       100       110       
pF1KB8 TKDPSRVGDSQNPLLSDGDLSTMIGKGT---GAASFDEFGNSKYQNRRTMSSSDRAMMNA
             :.. :  . :.:  :. .:. .   ::..   .:.. . :    : . ....:.
CCDS10 ------VSEVQF-VESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRA-QTLQNG
              40         50        60        70        80          

       120       130       140       150       160       170       
pF1KB8 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTF
        ..:  ......: .. .: . :.::..  ..  .::    . .::::..:: ::.:. .
CCDS10 RRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHML
      90       100       110       120       130       140         

       180       190       200       210       220          230    
pF1KB8 KEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ---VQMAATH
        ..  . ...   .:. : :. . :  ..  :    .. ::   : . ..   :.:.: .
CCDS10 LDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALR
     150       160       170       180       190       200         

          240       250       260       270       280       290    
pF1KB8 IARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYP
       . ..  .  .  :: : .. .::. .:..    .:: ::. ... : . :.:.  ::   
CCDS10 LLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRK--RL---
     210       220       230       240       250       260         

          300       310                                            
pF1KB8 RAPDLFPTDFKFDTPVDKLPQL                                      
              :.:. :::...:                                         
CCDS10 -------TEFE-DTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEE
                  270       280       290       300       310      




316 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:53:02 2016 done: Sat Nov  5 20:53:02 2016
 Total Scan time:  2.240 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]