Result of FASTA (ccds) for
pF1KB8233
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8233, 149 aa
1>>>pF1KB8233 149 - 149 aa - 149 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3678+/-0.000864; mu= 0.0693+/- 0.052
mean_var=212.7594+/-42.965, 0's: 0 Z-trim(113.9): 13 B-trim: 13 in 1/51
Lambda= 0.087929
statistics sampled from 14517 (14529) to 14517 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.446), width: 16
Scan time: 1.830
The best scores are: opt bits E(32554)
CCDS269.1 STMN1 gene_id:3925|Hs108|chr1 ( 149) 928 128.8 1.2e-30
CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1 ( 174) 778 109.9 7.1e-25
CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8 ( 189) 623 90.2 6.3e-19
CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8 ( 216) 623 90.3 6.9e-19
CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8 ( 179) 610 88.6 1.9e-18
CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20 ( 169) 582 85.0 2.1e-17
CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20 ( 180) 582 85.0 2.2e-17
CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8 ( 187) 560 82.2 1.6e-16
CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8 ( 167) 544 80.2 6e-16
CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8 ( 203) 544 80.2 6.9e-16
>>CCDS269.1 STMN1 gene_id:3925|Hs108|chr1 (149 aa)
initn: 928 init1: 928 opt: 928 Z-score: 663.8 bits: 128.8 E(32554): 1.2e-30
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
70 80 90 100 110 120
130 140
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
:::::::::::::::::::::::::::::
CCDS26 ERLREKDKHIEEVRKNKESKDPADETEAD
130 140
>>CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1 (174 aa)
initn: 778 init1: 778 opt: 778 Z-score: 560.0 bits: 109.9 E(32554): 7.1e-25
Smith-Waterman score: 778; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
70 80 90 100 110 120
130 140
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
::::::
CCDS44 ERLREKMYFWTHGPGAHPAQISAEQSCLHSVPALCPALGLQSALITWSDLSHHH
130 140 150 160 170
>>CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8 (189 aa)
initn: 711 init1: 623 opt: 623 Z-score: 453.3 bits: 90.2 E(32554): 6.3e-19
Smith-Waterman score: 623; 72.1% identity (90.0% similar) in 140 aa overlap (4-143:48-187)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVP
::..: ::.: .:::.::.::.: : ..::
CCDS64 LFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB8 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
:: : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS64 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
80 90 100 110 120 130
100 110 120 130 140
pF1KB8 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
:::.:::..:::.:::::::..:: ::::.::::: :::::::: :. :
CCDS64 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
140 150 160 170 180
>>CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8 (216 aa)
initn: 699 init1: 623 opt: 623 Z-score: 452.5 bits: 90.3 E(32554): 6.9e-19
Smith-Waterman score: 623; 72.1% identity (90.0% similar) in 140 aa overlap (4-143:75-214)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVP
::..: ::.: .:::.::.::.: : ..::
CCDS60 RKDESQRKDSADWRERRAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
:: : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS60 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
110 120 130 140 150 160
100 110 120 130 140
pF1KB8 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
:::.:::..:::.:::::::..:: ::::.::::: :::::::: :. :
CCDS60 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
170 180 190 200 210
>>CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8 (179 aa)
initn: 610 init1: 610 opt: 610 Z-score: 444.7 bits: 88.6 E(32554): 1.9e-18
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (5-138:39-172)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
:..::...::::::::::::.: : :
CCDS43 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
CCDS43 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
::::::: ::: ::::::..:: .:::.::..: :::.:::
CCDS43 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
130 140 150 160 170
>>CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20 (169 aa)
initn: 636 init1: 484 opt: 582 Z-score: 425.8 bits: 85.0 E(32554): 2.1e-17
Smith-Waterman score: 582; 67.6% identity (88.5% similar) in 139 aa overlap (5-141:28-165)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPL
:..::.:.::::::.::.::. : : :: :.
CCDS63 MKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLS-PESPM
10 20 30 40 50
40 50 60 70 80 90
pF1KB8 --SPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSK
::::::: ::::.::.:::::::::..::.:::::::.::::.:::.::.:::::::.
CCDS63 LSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSR
60 70 80 90 100 110
100 110 120 130 140
pF1KB8 MAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
.:::::..::: .:: :::..:: ::::::. : :::.:::...
CCDS63 QAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG
120 130 140 150 160
>>CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20 (180 aa)
initn: 636 init1: 484 opt: 582 Z-score: 425.5 bits: 85.0 E(32554): 2.2e-17
Smith-Waterman score: 582; 67.6% identity (88.5% similar) in 139 aa overlap (5-141:39-176)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
:..::.:.::::::.::.::. : : ::
CCDS13 KEKMKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLS-PE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 FPL--SPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNN
:. ::::::: ::::.::.:::::::::..::.:::::::.::::.:::.::.:::::
CCDS13 SPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNN
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 FSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
::..:::::..::: .:: :::..:: ::::::. : :::.:::...
CCDS13 FSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG
130 140 150 160 170 180
>>CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8 (187 aa)
initn: 557 init1: 557 opt: 560 Z-score: 410.2 bits: 82.2 E(32554): 1.6e-16
Smith-Waterman score: 560; 71.0% identity (85.5% similar) in 138 aa overlap (5-140:39-176)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
:..::...::::::::::::.: : :
CCDS56 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
CCDS56 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKD-KHIE-EVRKNKESKDPADETEAD
::::::: ::: ::::::..:: .:::.:: : : :.... ::.
CCDS56 KMAEEKLILKMEQIKENREANLAAIIERLQEKLVKFISSELKESIESQFLELQREGEKQ
130 140 150 160 170 180
>>CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8 (167 aa)
initn: 544 init1: 544 opt: 544 Z-score: 399.8 bits: 80.2 E(32554): 6e-16
Smith-Waterman score: 544; 71.0% identity (91.1% similar) in 124 aa overlap (4-127:39-162)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVP
::..: ::.: .:::.::.::.: : ..::
CCDS64 LFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
:: : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS64 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
:::.:::..:::.:::::::..:: ::::.::.
CCDS64 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKEPPAAR
130 140 150 160
>>CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8 (203 aa)
initn: 599 init1: 544 opt: 544 Z-score: 398.7 bits: 80.2 E(32554): 6.9e-16
Smith-Waterman score: 544; 71.0% identity (91.1% similar) in 124 aa overlap (4-127:75-198)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVP
::..: ::.: .:::.::.::.: : ..::
CCDS64 RKDESQRKDSADWRERRAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
:: : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS64 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
110 120 130 140 150 160
100 110 120 130 140
pF1KB8 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
:::.:::..:::.:::::::..:: ::::.::.
CCDS64 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKEPPAAR
170 180 190 200
149 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:49:02 2016 done: Fri Nov 4 10:49:02 2016
Total Scan time: 1.830 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]