Result of FASTA (omim) for
pF1KB8233
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8233, 149 aa
1>>>pF1KB8233 149 - 149 aa - 149 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8716+/-0.000345; mu= -2.6702+/- 0.022
mean_var=224.8548+/-46.008, 0's: 0 Z-trim(121.8): 21 B-trim: 64 in 1/56
Lambda= 0.085531
statistics sampled from 38989 (39010) to 38989 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.457), width: 16
Scan time: 5.580
The best scores are: opt bits E(85289)
NP_005554 (OMIM: 151442) stathmin isoform a [Homo ( 149) 928 125.8 2.6e-29
NP_981946 (OMIM: 151442) stathmin isoform a [Homo ( 149) 928 125.8 2.6e-29
NP_981944 (OMIM: 151442) stathmin isoform a [Homo ( 149) 928 125.8 2.6e-29
NP_001138926 (OMIM: 151442) stathmin isoform b [Ho ( 174) 778 107.3 1.1e-23
XP_005251199 (OMIM: 600621) PREDICTED: stathmin-2 ( 174) 610 86.6 1.9e-17
NP_008960 (OMIM: 600621) stathmin-2 isoform 2 [Hom ( 179) 610 86.6 2e-17
NP_001263239 (OMIM: 608362) stathmin-3 isoform 2 [ ( 169) 582 83.1 2.1e-16
NP_056978 (OMIM: 608362) stathmin-3 isoform 1 [Hom ( 180) 582 83.1 2.2e-16
NP_001186143 (OMIM: 600621) stathmin-2 isoform 1 [ ( 187) 560 80.4 1.5e-15
>>NP_005554 (OMIM: 151442) stathmin isoform a [Homo sapi (149 aa)
initn: 928 init1: 928 opt: 928 Z-score: 647.1 bits: 125.8 E(85289): 2.6e-29
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
70 80 90 100 110 120
130 140
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
:::::::::::::::::::::::::::::
NP_005 ERLREKDKHIEEVRKNKESKDPADETEAD
130 140
>>NP_981946 (OMIM: 151442) stathmin isoform a [Homo sapi (149 aa)
initn: 928 init1: 928 opt: 928 Z-score: 647.1 bits: 125.8 E(85289): 2.6e-29
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_981 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_981 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
70 80 90 100 110 120
130 140
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
:::::::::::::::::::::::::::::
NP_981 ERLREKDKHIEEVRKNKESKDPADETEAD
130 140
>>NP_981944 (OMIM: 151442) stathmin isoform a [Homo sapi (149 aa)
initn: 928 init1: 928 opt: 928 Z-score: 647.1 bits: 125.8 E(85289): 2.6e-29
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_981 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_981 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
70 80 90 100 110 120
130 140
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
:::::::::::::::::::::::::::::
NP_981 ERLREKDKHIEEVRKNKESKDPADETEAD
130 140
>>NP_001138926 (OMIM: 151442) stathmin isoform b [Homo s (174 aa)
initn: 778 init1: 778 opt: 778 Z-score: 546.2 bits: 107.3 E(85289): 1.1e-23
Smith-Waterman score: 778; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
70 80 90 100 110 120
130 140
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
::::::
NP_001 ERLREKMYFWTHGPGAHPAQISAEQSCLHSVPALCPALGLQSALITWSDLSHHH
130 140 150 160 170
>>XP_005251199 (OMIM: 600621) PREDICTED: stathmin-2 isof (174 aa)
initn: 610 init1: 610 opt: 610 Z-score: 434.2 bits: 86.6 E(85289): 1.9e-17
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (5-138:34-167)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
:..::...::::::::::::.: : :
XP_005 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
XP_005 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
::::::: ::: ::::::..:: .:::.::..: :::.:::
XP_005 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
130 140 150 160 170
>>NP_008960 (OMIM: 600621) stathmin-2 isoform 2 [Homo sa (179 aa)
initn: 610 init1: 610 opt: 610 Z-score: 434.0 bits: 86.6 E(85289): 2e-17
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (5-138:39-172)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
:..::...::::::::::::.: : :
NP_008 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
NP_008 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
::::::: ::: ::::::..:: .:::.::..: :::.:::
NP_008 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
130 140 150 160 170
>>NP_001263239 (OMIM: 608362) stathmin-3 isoform 2 [Homo (169 aa)
initn: 636 init1: 484 opt: 582 Z-score: 415.7 bits: 83.1 E(85289): 2.1e-16
Smith-Waterman score: 582; 67.6% identity (88.5% similar) in 139 aa overlap (5-141:28-165)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPL
:..::.:.::::::.::.::. : : :: :.
NP_001 MKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLS-PESPM
10 20 30 40 50
40 50 60 70 80 90
pF1KB8 --SPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSK
::::::: ::::.::.:::::::::..::.:::::::.::::.:::.::.:::::::.
NP_001 LSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSR
60 70 80 90 100 110
100 110 120 130 140
pF1KB8 MAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
.:::::..::: .:: :::..:: ::::::. : :::.:::...
NP_001 QAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG
120 130 140 150 160
>>NP_056978 (OMIM: 608362) stathmin-3 isoform 1 [Homo sa (180 aa)
initn: 636 init1: 484 opt: 582 Z-score: 415.3 bits: 83.1 E(85289): 2.2e-16
Smith-Waterman score: 582; 67.6% identity (88.5% similar) in 139 aa overlap (5-141:39-176)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
:..::.:.::::::.::.::. : : ::
NP_056 KEKMKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLS-PE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 FPL--SPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNN
:. ::::::: ::::.::.:::::::::..::.:::::::.::::.:::.::.:::::
NP_056 SPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNN
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 FSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
::..:::::..::: .:: :::..:: ::::::. : :::.:::...
NP_056 FSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG
130 140 150 160 170 180
>>NP_001186143 (OMIM: 600621) stathmin-2 isoform 1 [Homo (187 aa)
initn: 557 init1: 557 opt: 560 Z-score: 400.4 bits: 80.4 E(85289): 1.5e-15
Smith-Waterman score: 560; 71.0% identity (85.5% similar) in 138 aa overlap (5-140:39-176)
10 20 30
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
:..::...::::::::::::.: : :
NP_001 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
NP_001 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKD-KHIE-EVRKNKESKDPADETEAD
::::::: ::: ::::::..:: .:::.:: : : :.... ::.
NP_001 KMAEEKLILKMEQIKENREANLAAIIERLQEKLVKFISSELKESIESQFLELQREGEKQ
130 140 150 160 170 180
149 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:49:02 2016 done: Fri Nov 4 10:49:03 2016
Total Scan time: 5.580 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]