Restriction map for
pF1KB8233
(Circular) (Six-base) MAPSORT of: pF1KB8233.seq Check: 9915 from: 1 to: 3560
pF1KB8233 3560 bp
With 182 enzymes: SgfI *
June 20, 2008 10:28 ..
AccI GT'mk_AC
Cuts at: 598 598
Size: 3560
Acc65I G'GTAC_C
Cuts at: 576 576
Size: 3560
AclI AA'CG_TT
Cuts at: 471 3400 471
Size: 2929 631
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 340 369 566 1385 1817 2564 2832 340
Size: 29 197 819 432 747 268 1068
Fragments arranged by size:
1068 819 747 432 268 197 29
AflIII A'CryG_T
Cuts at: 912 2016 2993 912
Size: 1104 977 1479
Fragments arranged by size:
1479 1104 977
AgeI A'CCGG_T
Cuts at: 1948 1948
Size: 3560
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 505 537 505
Size: 32 3528
AlwNI CAG_nnn'CTG
Cuts at: 865 2432 865
Size: 1567 1993
ApaLI G'TGCA_C
Cuts at: 2330 2330
Size: 3560
ApoI r'AATT_y
Cuts at: 208 254 564 2913 3169 208
Size: 46 310 2349 256 599
Fragments arranged by size:
2349 599 310 256 46
AseI AT'TA_AT
Cuts at: 20 20
Size: 3560
AsiSI GCG_AT'CGC
Cuts at: 104 104
Size: 3560
AvaI C'yCGr_G
Cuts at: 580 580
Size: 3560
BamHI G'GATC_C
Cuts at: 585 585
Size: 3560
BanI G'GyrC_C
Cuts at: 576 990 1238 1273 576
Size: 414 248 35 2863
Fragments arranged by size:
2863 414 248 35
BanII G_rGCy'C
Cuts at: 574 1604 574
Size: 1030 2530
BbeI G_GCGC'C
Cuts at: 994 1242 994
Size: 248 3312
BbvCI CC'TCA_GC
Cuts at: 305 305
Size: 3560
BciVI GTATCCnnnnn_n'
Cuts at: 1458 2219 3560 1458
Size: 761 1341 1458
Fragments arranged by size:
1458 1341 761
BclI T'GATC_A
Cuts at: 1080 1080
Size: 3560
BglII A'GATC_T
Cuts at: 1075 3112 1075
Size: 2037 1523
BlpI GC'TnA_GC
Cuts at: 672 672
Size: 3560
Bme1580I G_kGCm'C
Cuts at: 1185 1278 2334 1185
Size: 93 1056 2411
Fragments arranged by size:
2411 1056 93
BmrI ACTGGGnnnn_n'
Cuts at: 772 853 1188 3332 772
Size: 81 335 2144 1000
Fragments arranged by size:
2144 1000 335 81
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 1927 1927
Size: 3560
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 160 268 160
Size: 108 3452
Bpu10I CC'TnA_GC
Cuts at: 305 305
Size: 3560
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 736 1615 2107 2405 736
Size: 879 492 298 1891
Fragments arranged by size:
1891 879 492 298
BsaI GGTCTCn'nnnn_
Cuts at: 3264 3264
Size: 3560
BsaAI yAC'GTr
Cuts at: 913 913
Size: 3560
BsaBI GATnn'nnATC
Cuts at: 6 1074 3111 6
Size: 1068 2037 455
Fragments arranged by size:
2037 1068 455
BsaHI Gr'CG_yC
Cuts at: 991 1239 1941 3437 991
Size: 248 702 1496 1114
Fragments arranged by size:
1496 1114 702 248
BsaWI w'CCGG_w
Cuts at: 749 1270 1948 2222 2369 2780 749
Size: 521 678 274 147 411 1529
Fragments arranged by size:
1529 678 521 411 274 147
BseYI C'CCAG_C
Cuts at: 985 1743 2320 2816 985
Size: 758 577 496 1729
Fragments arranged by size:
1729 758 577 496
BsiEI CG_ry'CG
Cuts at: 104 1102 1148 2356 104
Size: 998 46 1208 1308
Fragments arranged by size:
1308 1208 998 46
BsiHKAI G_wGCw'C
Cuts at: 341 574 1352 1542 2334 341
Size: 233 778 190 792 1567
Fragments arranged by size:
1567 792 778 233 190
Bsp1286I G_dGCh'C
Cuts at: 341 574 1185 1278 1352 1542 1604 2334 341
Size: 233 611 93 74 190 62 730 1567
Fragments arranged by size:
1567 730 611 233 190 93 74 62
BspEI T'CCGG_A
Cuts at: 2780 2780
Size: 3560
BspHI T'CATG_A
Cuts at: 2736 2736
Size: 3560
BspMI ACCTGCnnnn'nnnn_
Cuts at: 610 824 1126 1507 610
Size: 214 302 381 2663
Fragments arranged by size:
2663 381 302 214
BsrBI CCG'CTC
Cuts at: 50 1852 1906 3390 3555 50
Size: 1802 54 1484 165 55
Fragments arranged by size:
1802 1484 165 55 54
BsrDI GCAATG_nn'
Cuts at: 1472 1472
Size: 3560
BsrFI r'CCGG_y
Cuts at: 1558 1739 1948 1558
Size: 181 209 3170
Fragments arranged by size:
3170 209 181
BssSI C'ACGA_G
Cuts at: 340 1831 2189 340
Size: 1491 358 1711
Fragments arranged by size:
1711 1491 358
BstAPI GCAn_nnn'nTGC
Cuts at: 937 937
Size: 3560
BstBI TT'CG_AA
Cuts at: 1921 1921
Size: 3560
BstYI r'GATC_y
Cuts at: 1 237 585 1052 1075 1410 1656 2668 2754
Size: 236 348 467 23 335 246 1012 86
Cuts at: 2754 2766 3112 1
Size: 12 346 449
Fragments arranged by size:
1012 467 449 348 346 335 246 236
86 23 12
Bsu36I CC'TnA_GG
Cuts at: 153 153
Size: 3560
BtgI C'CryG_G
Cuts at: 107 107
Size: 3560
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 1510 1691 1854 1510
Size: 181 163 3216
Fragments arranged by size:
3216 181 163
BtsI GCAGTG_nn'
Cuts at: 803 803
Size: 3560
DraI TTT'AAA
Cuts at: 559 559
Size: 3560
DrdI GACnn_nn'nnGTC
Cuts at: 1266 2124 1266
Size: 858 2702
EaeI y'GGCC_r
Cuts at: 1145 1319 1710 1737 3082 1145
Size: 174 391 27 1345 1623
Fragments arranged by size:
1623 1345 391 174 27
EagI C'GGCC_G
Cuts at: 1145 1145
Size: 3560
EarI CTCTTCn'nnn_
Cuts at: 365 395 1583 1793 365
Size: 30 1188 210 2132
Fragments arranged by size:
2132 1188 210 30
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 1768 2078 2224 3370 1768
Size: 310 146 1146 1958
Fragments arranged by size:
1958 1146 310 146
EcoICRI GAG'CTC
Cuts at: 572 572
Size: 3560
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 160 268 340 369 566 1385 1817 2564 2832
Size: 108 72 29 197 819 432 747 268
Cuts at: 2832 160
Size: 888
Fragments arranged by size:
888 819 747 432 268 197 108 72
29
EcoO109I rG'GnC_Cy
Cuts at: 699 699
Size: 3560
EcoRI G'AATT_C
Cuts at: 208 564 208
Size: 356 3204
EcoRV GAT'ATC
Cuts at: 123 123
Size: 3560
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 370 1579 370
Size: 1209 2351
FspI TGC'GCA
Cuts at: 1341 1341
Size: 3560
HaeII r_GCGC'y
Cuts at: 994 1242 2264 3243 994
Size: 248 1022 979 1311
Fragments arranged by size:
1311 1022 979 248
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1402 1432 1434 1464 1402
Size: 30 2 30 3498
Fragments arranged by size:
3498 30 30 2
HincII GTy'rAC
Cuts at: 599 599
Size: 3560
KasI G'GCGC_C
Cuts at: 990 1238 990
Size: 248 3312
KpnI G_GTAC'C
Cuts at: 580 580
Size: 3560
MluI A'CGCG_T
Cuts at: 2993 2993
Size: 3560
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 2231 2415 2231
Size: 184 3376
MscI TGG'CCA
Cuts at: 1321 1321
Size: 3560
MslI CAynn'nnrTG
Cuts at: 1549 1676 1549
Size: 127 3433
MspA1I CmG'CkG
Cuts at: 321 671 985 1345 2358 2603 321
Size: 350 314 360 1013 245 1278
Fragments arranged by size:
1278 1013 360 350 314 245
NaeI GCC'GGC
Cuts at: 1741 1741
Size: 3560
NarI GG'CG_CC
Cuts at: 991 1239 991
Size: 248 3312
NcoI C'CATG_G
Cuts at: 107 107
Size: 3560
NgoMIV G'CCGG_C
Cuts at: 1739 1739
Size: 3560
NspI r_CATG'y
Cuts at: 613 1113 2020 613
Size: 500 907 2153
Fragments arranged by size:
2153 907 500
PciI A'CATG_T
Cuts at: 2016 2016
Size: 3560
PflMI CCAn_nnn'nTGG
Cuts at: 420 420
Size: 3560
PmeI GTTT'AAAC
Cuts at: 559 559
Size: 3560
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2699 2731 2699
Size: 32 3528
PshAI GACnn'nnGTC
Cuts at: 291 291
Size: 3560
PstI C_TGCA'G
Cuts at: 279 607 1292 279
Size: 328 685 2547
Fragments arranged by size:
2547 685 328
PvuI CG_AT'CG
Cuts at: 104 104
Size: 3560
PvuII CAG'CTG
Cuts at: 321 985 1345 321
Size: 664 360 2536
Fragments arranged by size:
2536 664 360
RsrII CG'GwC_CG
Cuts at: 1755 1755
Size: 3560
SacI G_AGCT'C
Cuts at: 574 574
Size: 3560
SalI G'TCGA_C
Cuts at: 597 597
Size: 3560
SapI GCTCTTCn'nnn_
Cuts at: 1583 1793 1583
Size: 210 3350
SbfI CC_TGCA'GG
Cuts at: 607 607
Size: 3560
ScaI AGT'ACT
Cuts at: 3077 3077
Size: 3560
SfcI C'TryA_G
Cuts at: 33 275 603 1288 2281 2472 33
Size: 242 328 685 993 191 1121
Fragments arranged by size:
1121 993 685 328 242 191
SfoI GGC'GCC
Cuts at: 992 1240 992
Size: 248 3312
SgfI GCG_AT'CGC
Cuts at: 104 104
Size: 3560
SmaI CCC'GGG
Cuts at: 582 582
Size: 3560
SmlI C'TyrA_G
Cuts at: 715 1630 2122 2384 715
Size: 915 492 262 1891
Fragments arranged by size:
1891 915 492 262
SpeI A'CTAG_T
Cuts at: 67 67
Size: 3560
SphI G_CATG'C
Cuts at: 613 1113 613
Size: 500 3060
StyI C'CwwG_G
Cuts at: 107 694 1048 107
Size: 587 354 2619
Fragments arranged by size:
2619 587 354
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 176 1143 1276 1735 1944 176
Size: 967 133 459 209 1792
Fragments arranged by size:
1792 967 459 209 133
TatI w'GTAC_w
Cuts at: 3075 3075
Size: 3560
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 3077 3109 3077
Size: 32 3528
Tth111I GACn'n_nGTC
Cuts at: 1357 1357
Size: 3560
XbaI T'CTAG_A
Cuts at: 591 591
Size: 3560
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 1055 1055
Size: 3560
XmaI C'CCGG_G
Cuts at: 580 580
Size: 3560
XmnI GAAnn'nnTTC
Cuts at: 200 353 200
Size: 153 3407
Enzymes that do cut:
AccI Acc65I AclI AcuI AflIII AgeI AloI AlwNI
ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII
BbeI BbvCI BciVI BclI BglII BlpI Bme1580I BmrI
BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BseYI BsiEI BsiHKAI Bsp1286I BspEI BspHI BspMI
BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstYI Bsu36I
BtgI BtgZI BtsI DraI DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoO109I EcoRI EcoRV FalI FspI
HaeII Hin4I HincII KasI KpnI MluI MmeI MscI
MslI MspA1I NaeI NarI NcoI NgoMIV NspI PciI
PflMI PmeI PpiI PshAI PstI PvuI PvuII RsrII
SacI SalI SapI SbfI ScaI SfcI SfoI SgfI
SmaI SmlI SpeI SphI StyI TaqII TatI TstI
Tth111I XbaI XcmI XmaI XmnI
Enzymes that do not cut:
AarI AatII AfeI AflII AhdI AleI AlfI ApaI
AscI AvrII BaeI BbsI BcgI BfrBI BglI BmgBI
BmtI BsaXI BseRI BsgI BsiWI BsmI BsmBI BsrGI
BssHII BstEII BstXI BstZ17I ClaI CspCI DraIII EcoNI
FseI FspAI HindIII HpaI MfeI NdeI NheI NotI
NruI NsiI PacI PasI PfoI PmlI PpuMI PsiI
PspOMI PspXI PsrI SacII SanDI SexAI SfiI SgrAI
SnaBI SrfI SspI StuI SwaI XhoI ZraI