FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8237, 259 aa
  1>>>pF1KB8237 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9250+/-0.000918; mu= 7.2913+/- 0.055
 mean_var=131.1918+/-25.677, 0's: 0 Z-trim(110.8): 200  B-trim: 86 in 1/51
 Lambda= 0.111975
 statistics sampled from 11652 (11896) to 11652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS12395.1 RFXANK gene_id:8625|Hs108|chr19        ( 260) 1691 284.1 6.6e-77
CCDS12396.1 RFXANK gene_id:8625|Hs108|chr19        ( 237)  971 167.8 6.3e-42
CCDS62611.1 RFXANK gene_id:8625|Hs108|chr19        ( 238)  971 167.8 6.3e-42
CCDS4020.1 ANKRA2 gene_id:57763|Hs108|chr5         ( 313)  791 138.8 4.4e-33


>>CCDS12395.1 RFXANK gene_id:8625|Hs108|chr19             (260 aa)
 initn: 1285 init1: 1285 opt: 1691  Z-score: 1494.2  bits: 284.1 E(32554): 6.6e-77
Smith-Waterman score: 1691; 99.6% identity (99.6% similar) in 260 aa overlap (1-259:1-260)

               10        20        30        40        50        60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
               10        20        30        40        50        60

                70        80        90       100       110         
pF1KB8 PQ-GSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB8 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
              190       200       210       220       230       240

     240       250         
pF1KB8 VIENHILKLFQSNLVPADPE
       ::::::::::::::::::::
CCDS12 VIENHILKLFQSNLVPADPE
              250       260

>>CCDS12396.1 RFXANK gene_id:8625|Hs108|chr19             (237 aa)
 initn: 1543 init1: 971 opt: 971  Z-score: 866.2  bits: 167.8 E(32554): 6.3e-42
Smith-Waterman score: 1502; 91.1% identity (91.1% similar) in 259 aa overlap (1-259:1-237)

               10        20        30        40        50        60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PQGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD
       :::::::::::::::::::::::::::::                       ::::::::
CCDS12 PQGSSLKHSTTLTNRQRGNEVSALPATLDC----------------------DNLVNKPD
               70        80        90                              

              130       140       150       160       170       180
pF1KB8 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV
      100       110       120       130       140       150        

              190       200       210       220       230       240
pF1KB8 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV
      160       170       180       190       200       210        

              250         
pF1KB8 IENHILKLFQSNLVPADPE
       :::::::::::::::::::
CCDS12 IENHILKLFQSNLVPADPE
      220       230       

>>CCDS62611.1 RFXANK gene_id:8625|Hs108|chr19             (238 aa)
 initn: 1403 init1: 971 opt: 971  Z-score: 866.1  bits: 167.8 E(32554): 6.3e-42
Smith-Waterman score: 1490; 90.8% identity (90.8% similar) in 260 aa overlap (1-259:1-238)

               10        20        30        40        50        60
pF1KB8 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
               10        20        30        40        50        60

                70        80        90       100       110         
pF1KB8 PQ-GSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
       :: :::::::::::::::::::::::::::                       :::::::
CCDS62 PQAGSSLKHSTTLTNRQRGNEVSALPATLDC----------------------DNLVNKP
               70        80        90                              

     120       130       140       150       160       170         
pF1KB8 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
      100       110       120       130       140       150        

     180       190       200       210       220       230         
pF1KB8 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
      160       170       180       190       200       210        

     240       250         
pF1KB8 VIENHILKLFQSNLVPADPE
       ::::::::::::::::::::
CCDS62 VIENHILKLFQSNLVPADPE
      220       230        

>>CCDS4020.1 ANKRA2 gene_id:57763|Hs108|chr5              (313 aa)
 initn: 872 init1: 613 opt: 791  Z-score: 707.3  bits: 138.8 E(32554): 4.4e-33
Smith-Waterman score: 791; 64.9% identity (85.6% similar) in 188 aa overlap (64-251:124-310)

            40        50        60        70        80        90   
pF1KB8 GSDTVVLSLFPCTPEPVNPEPDASVSSPQGSSLKHSTTLTNRQRGNEVSALPATLDSLSI
                                     : .:.::::::..::::::. :   .:::.
CCDS40 LFKAECNIHTSPSPGIQVRHVYTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSV
           100       110       120       130       140       150   

           100       110       120       130       140       150   
pF1KB8 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA
       ::::::::.  :  .... .:..:. ::.:::::.::.: :.: .:.:::. ::::..:.
CCDS40 HQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG
           160       170        180       190       200       210  

           160       170       180       190       200       210   
pF1KB8 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA
       : :::::::: . :::::: .::.  ::.: :::::::::::::.:::::::. ::  ::
CCDS40 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA
            220       230       240       250       260       270  

           220       230       240       250         
pF1KB8 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADPE
       : : :.::::. ::::::::::.::::::.:.:::.:.        
CCDS40 DPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE     
            280       290       300       310        




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:02:19 2016 done: Fri Nov  4 22:02:19 2016
 Total Scan time:  2.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]