FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8240, 244 aa
  1>>>pF1KB8240 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7829+/-0.000945; mu= 11.3972+/- 0.057
 mean_var=60.6854+/-11.926, 0's: 0 Z-trim(104.0): 29  B-trim: 46 in 1/48
 Lambda= 0.164639
 statistics sampled from 7674 (7682) to 7674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.236), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS9705.1 C14orf166 gene_id:51637|Hs108|chr14     ( 244) 1611 391.2 3.4e-109


>>CCDS9705.1 C14orf166 gene_id:51637|Hs108|chr14          (244 aa)
 initn: 1611 init1: 1611 opt: 1611  Z-score: 2073.8  bits: 391.2 E(32554): 3.4e-109
Smith-Waterman score: 1611; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KB8 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG
              190       200       210       220       230       240

           
pF1KB8 KVGR
       ::::
CCDS97 KVGR
           




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:52:05 2016 done: Fri Nov  4 10:52:05 2016
 Total Scan time:  1.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]