FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8240, 244 aa
  1>>>pF1KB8240 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5573+/-0.000385; mu= 12.8044+/- 0.024
 mean_var=62.5586+/-12.606, 0's: 0 Z-trim(111.5): 25  B-trim: 0 in 0/51
 Lambda= 0.162155
 statistics sampled from 20045 (20056) to 20045 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.235), width:  16
 Scan time:  5.500

The best scores are:                                      opt bits E(85289)
NP_057123 (OMIM: 610858) UPF0568 protein C14orf166 ( 244) 1611 385.5 4.5e-107


>>NP_057123 (OMIM: 610858) UPF0568 protein C14orf166 [Ho  (244 aa)
 initn: 1611 init1: 1611 opt: 1611  Z-score: 2043.3  bits: 385.5 E(85289): 4.5e-107
Smith-Waterman score: 1611; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KB8 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 INLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLG
              190       200       210       220       230       240

           
pF1KB8 KVGR
       ::::
NP_057 KVGR
           




244 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:52:06 2016 done: Fri Nov  4 10:52:07 2016
 Total Scan time:  5.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]