Result of FASTA (ccds) for
pF1KB8242
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8242, 198 aa
1>>>pF1KB8242 198 - 198 aa - 198 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1940+/-0.000802; mu= 11.4447+/- 0.049
mean_var=136.4322+/-27.290, 0's: 0 Z-trim(113.4): 43 B-trim: 118 in 1/51
Lambda= 0.109803
statistics sampled from 13992 (14034) to 13992 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.431), width: 16
Scan time: 1.760
The best scores are: opt bits E(32554)
CCDS5612.1 SRI gene_id:6717|Hs108|chr7 ( 198) 1386 229.9 8.1e-61
CCDS47638.1 SRI gene_id:6717|Hs108|chr7 ( 183) 1249 208.1 2.6e-54
CCDS59063.1 SRI gene_id:6717|Hs108|chr7 ( 180) 1194 199.4 1.1e-51
CCDS82527.1 GCA gene_id:25801|Hs108|chr2 ( 198) 811 138.8 2.1e-33
CCDS2218.1 GCA gene_id:25801|Hs108|chr2 ( 217) 811 138.8 2.3e-33
CCDS345.1 PEF1 gene_id:553115|Hs108|chr1 ( 284) 418 76.7 1.5e-14
CCDS3854.1 PDCD6 gene_id:10016|Hs108|chr5 ( 191) 414 75.9 1.8e-14
CCDS58940.1 PDCD6 gene_id:10016|Hs108|chr5 ( 189) 402 74.0 6.6e-14
CCDS45246.1 CAPN3 gene_id:825|Hs108|chr15 ( 309) 362 67.9 7.5e-12
CCDS12489.1 CAPNS1 gene_id:826|Hs108|chr19 ( 268) 359 67.3 9.4e-12
CCDS10085.1 CAPN3 gene_id:825|Hs108|chr15 ( 729) 362 68.3 1.3e-11
CCDS32207.1 CAPN3 gene_id:825|Hs108|chr15 ( 815) 362 68.3 1.4e-11
CCDS45245.1 CAPN3 gene_id:825|Hs108|chr15 ( 821) 362 68.3 1.5e-11
CCDS54010.1 CAPNS2 gene_id:84290|Hs108|chr16 ( 248) 339 64.1 8e-11
>>CCDS5612.1 SRI gene_id:6717|Hs108|chr7 (198 aa)
initn: 1386 init1: 1386 opt: 1386 Z-score: 1205.3 bits: 229.9 E(32554): 8.1e-61
Smith-Waterman score: 1386; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
130 140 150 160 170 180
190
pF1KB8 QGVVNFPYDDFIQCVMSV
::::::::::::::::::
CCDS56 QGVVNFPYDDFIQCVMSV
190
>>CCDS47638.1 SRI gene_id:6717|Hs108|chr7 (183 aa)
initn: 1249 init1: 1249 opt: 1249 Z-score: 1088.4 bits: 208.1 E(32554): 2.6e-54
Smith-Waterman score: 1249; 100.0% identity (100.0% similar) in 181 aa overlap (18-198:3-183)
10 20 30 40 50 60
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
:::::::::::::::::::::::::::::::::::::::::::
CCDS47 MQYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
10 20 30 40
70 80 90 100 110 120
pF1KB8 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
110 120 130 140 150 160
190
pF1KB8 QGVVNFPYDDFIQCVMSV
::::::::::::::::::
CCDS47 QGVVNFPYDDFIQCVMSV
170 180
>>CCDS59063.1 SRI gene_id:6717|Hs108|chr7 (180 aa)
initn: 1194 init1: 1194 opt: 1194 Z-score: 1041.4 bits: 199.4 E(32554): 1.1e-51
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 173 aa overlap (18-190:3-175)
10 20 30 40 50 60
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
:::::::::::::::::::::::::::::::::::::::::::
CCDS59 MQYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
10 20 30 40
70 80 90 100 110 120
pF1KB8 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
110 120 130 140 150 160
190
pF1KB8 QGVVNFPYDDFIQCVMSV
::::::::::
CCDS59 QGVVNFPYDDVSLRN
170 180
>>CCDS82527.1 GCA gene_id:25801|Hs108|chr2 (198 aa)
initn: 817 init1: 782 opt: 811 Z-score: 713.0 bits: 138.8 E(32554): 2.1e-33
Smith-Waterman score: 811; 59.4% identity (82.3% similar) in 192 aa overlap (7-198:8-198)
10 20 30 40 50
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLT
: .: . ::.: :. ... : .: ::.:::::::..::.:::::::
CCDS82 MQMGQPVPETGPAILLDGYSG-PAYSDTYSSAGDSVYTYFSAVAGQDGEVDAEELQRCLT
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 QSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGT
:::: : :.::.:::::.:..::::: .: :::: ::::::.::.:...:.. : : :::
CCDS82 QSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTA
:. .::..:. ::.:::::....:.:::: ::.: ::::.::::::::::: ::.::
CCDS82 VEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHL
120 130 140 150 160 170
180 190
pF1KB8 QQGVVNFPYDDFIQCVMSV
::: .:: ::::.: .:..
CCDS82 QQGSANFIYDDFLQGTMAI
180 190
>>CCDS2218.1 GCA gene_id:25801|Hs108|chr2 (217 aa)
initn: 860 init1: 782 opt: 811 Z-score: 712.6 bits: 138.8 E(32554): 2.3e-33
Smith-Waterman score: 833; 56.2% identity (77.4% similar) in 217 aa overlap (1-198:1-217)
10 20 30 40
pF1KB8 MAYPGHPGAGGGY---YPGGYGGAP-------------GGPAFP---GQTQDPLYGYFAA
:::::. :. :.. :: : : .:::. ... : .: ::.:
CCDS22 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV
::::::..::.::::::::::: : :.::.:::::.:..::::: .: :::: ::::::.
CCDS22 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIA
::.:...:.. : : ::::. .::..:. ::.:::::....:.:::: ::.: ::::.:
CCDS22 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVA
130 140 150 160 170 180
170 180 190
pF1KB8 CCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
:::::::::: ::.:: ::: .:: ::::.: .:..
CCDS22 CCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
190 200 210
>>CCDS345.1 PEF1 gene_id:553115|Hs108|chr1 (284 aa)
initn: 422 init1: 252 opt: 418 Z-score: 374.7 bits: 76.7 E(32554): 1.5e-14
Smith-Waterman score: 432; 35.9% identity (62.7% similar) in 217 aa overlap (5-197:65-281)
10 20
pF1KB8 MAYPGHPGAG--GGYYPGG-YGGA-PGGP-AFP-
:::. : . ::: :::: :::: . :
CCDS34 QYGSGLPPGGGYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPP
40 50 60 70 80 90
30 40 50 60 70
pF1KB8 ----GQTQDPLYGYFAAVAGQDGQ-------IDADEL----QRCLTQSGIAGGYKPFNLE
: : ::: .: . : . .:.:. .. : :. . ... :: :
CCDS34 PSSYGAQQPGLYGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDE
100 110 120 130 140 150
80 90 100 110 120 130
pF1KB8 TCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMG
:: .:..:.:. :: . :. :: .. :.. : ..: ::::... :::.::. ::
CCDS34 TCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMG
160 170 180 190 200 210
140 150 160 170 180 190
pF1KB8 FRLSPQAVNSIAKRY---STNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDD
. :::: .. ...:: :.: . .: .: :..:..::..::..::: :: . . ..:
CCDS34 YNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFED
220 230 240 250 260 270
pF1KB8 FIQCVMSV
:. . :
CCDS34 FVTMTASRML
280
>>CCDS3854.1 PDCD6 gene_id:10016|Hs108|chr5 (191 aa)
initn: 446 init1: 212 opt: 414 Z-score: 373.3 bits: 75.9 E(32554): 1.8e-14
Smith-Waterman score: 419; 36.5% identity (66.0% similar) in 200 aa overlap (2-198:3-190)
10 20 30 40 50
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAV-AGQDGQIDADELQRCL
:: .:: :.: :: .:: :.: :. :.. : : ..: :. :::. :
CCDS38 MAAYSYRPGPGAG--PGPAAGA----ALPDQSF--LWNVFQRVDKDRSGVISDTELQQAL
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 TQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSG
.. : . ::: : : ..::.::. .. ..:.:: .: .. :.. : ..: : ::
CCDS38 SN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSG
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 TVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIACCVKLRALTDSFRRR
.: .::..::. .:.::: : . . .... .:. :.:::.: :. :. ::: :::
CCDS38 MIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRY
110 120 130 140 150 160
180 190
pF1KB8 DTAQQGVVNFPYDDFIQCVMSV
:: :.: .. :..... :.:.
CCDS38 DTDQDGWIQVSYEQYLSMVFSIV
170 180 190
>>CCDS58940.1 PDCD6 gene_id:10016|Hs108|chr5 (189 aa)
initn: 440 init1: 298 opt: 402 Z-score: 363.1 bits: 74.0 E(32554): 6.6e-14
Smith-Waterman score: 407; 36.5% identity (65.5% similar) in 200 aa overlap (2-198:3-188)
10 20 30 40 50
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAV-AGQDGQIDADELQRCL
:: .:: :.: :: .:: :.: :. :.. : : ..: :. :::. :
CCDS58 MAAYSYRPGPGAG--PGPAAGA----ALPDQSF--LWNVFQRVDKDRSGVISDTELQQAL
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 TQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSG
.. : . ::: : : ..::.::. .. ..:.:: .: .. :.. : ..: : ::
CCDS58 SN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSG
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 TVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIACCVKLRALTDSFRRR
.: .::..::. :.::: : . . .... .:. :.:::.: :. :. ::: :::
CCDS58 MIDKNELKQALS--GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRY
110 120 130 140 150 160
180 190
pF1KB8 DTAQQGVVNFPYDDFIQCVMSV
:: :.: .. :..... :.:.
CCDS58 DTDQDGWIQVSYEQYLSMVFSIV
170 180
>>CCDS45246.1 CAPN3 gene_id:825|Hs108|chr15 (309 aa)
initn: 316 init1: 250 opt: 362 Z-score: 326.3 bits: 67.9 E(32554): 7.5e-12
Smith-Waterman score: 362; 31.5% identity (68.0% similar) in 181 aa overlap (22-196:129-307)
10 20 30 40 50
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDA
::. .. :. . . : .::.: .: :
CCDS45 SNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSDQESEEQQQFRNIFKQIAGDDMEICA
100 110 120 130 140 150
60 70 80 90 100
pF1KB8 DELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWR
:::.. : . ... .: :.::.:: :....: : :: ....::..:: ...:.
CCDS45 DELKKVL--NTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQ
160 170 180 190 200 210
110 120 130 140 150 160
pF1KB8 QHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNG-KITFDDYIACCVK
. : .:::.:::.. :...:.. ::.:. : . :. ::. . .: ::..: : :.
CCDS45 KIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSFICCFVR
220 230 240 250 260 270
170 180 190
pF1KB8 LRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
:... .:. : .:.... ...: .:
CCDS45 LEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
280 290 300
>>CCDS12489.1 CAPNS1 gene_id:826|Hs108|chr19 (268 aa)
initn: 315 init1: 254 opt: 359 Z-score: 324.5 bits: 67.3 E(32554): 9.4e-12
Smith-Waterman score: 359; 36.4% identity (65.4% similar) in 162 aa overlap (39-196:105-266)
10 20 30 40 50 60
pF1KB8 AGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAG-GY
:: .::.: ...: ::. :..
CCDS12 QYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDL
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB8 KP--FNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQEL
: :...::: ::...: : .: .::.::: :: .. :. . .::::::::. .::
CCDS12 KTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSEL
140 150 160 170 180 190
130 140 150 160 170 180
pF1KB8 QKALTTMGFRLSPQAVNSIAKRYST-NGKITFDDYIACCVKLRALTDSFRRRDTAQQGVV
:. . ::.:. . : : .::: .:.. ::..:.: :.: :. .:. : : .
CCDS12 PGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQI
200 210 220 230 240 250
190
pF1KB8 NFPYDDFIQCVMSV
. ....: .:
CCDS12 QVNIQEWLQLTMYS
260
198 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:54:55 2016 done: Fri Nov 4 10:54:55 2016
Total Scan time: 1.760 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]