FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8244, 334 aa
  1>>>pF1KB8244 334 - 334 aa - 334 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6824+/-0.000845; mu= 13.6715+/- 0.051
 mean_var=60.5827+/-12.251, 0's: 0 Z-trim(104.8): 21  B-trim: 44 in 1/53
 Lambda= 0.164778
 statistics sampled from 8047 (8062) to 8047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.248), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS6198.1 COPS5 gene_id:10987|Hs108|chr8          ( 334) 2209 533.6 8.2e-152
CCDS46437.1 PSMD14 gene_id:10213|Hs108|chr2        ( 310)  474 121.2 1.1e-27


>>CCDS6198.1 COPS5 gene_id:10987|Hs108|chr8               (334 aa)
 initn: 2209 init1: 2209 opt: 2209  Z-score: 2839.0  bits: 533.6 E(32554): 8.2e-152
Smith-Waterman score: 2209; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)

               10        20        30        40        50        60
pF1KB8 MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 VNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKL
              250       260       270       280       290       300

              310       320       330    
pF1KB8 AKATRDSCKTTIEAIHGLMSQVIKDKLFNQINIS
       ::::::::::::::::::::::::::::::::::
CCDS61 AKATRDSCKTTIEAIHGLMSQVIKDKLFNQINIS
              310       320       330    

>>CCDS46437.1 PSMD14 gene_id:10213|Hs108|chr2             (310 aa)
 initn: 414 init1: 236 opt: 474  Z-score: 610.4  bits: 121.2 E(32554): 1.1e-27
Smith-Waterman score: 474; 35.7% identity (66.3% similar) in 252 aa overlap (57-301:33-271)

         30        40        50        60        70        80      
pF1KB8 EIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGK-V
                                     ::.::::::. :.:.:  .::::::::. :
CCDS46 RLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV
             10        20        30        40        50        60  

          90       100       110       120       130       140     
pF1KB8 DGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGC
       :  :. ..: ::.:  ::   :...:.   ..: ...  ::.:: : ..::::::::.::
CCDS46 DDYTVRVIDVFAMPQSGT--GVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGC
             70        80          90       100       110       120

         150       160       170       180       190           200 
pF1KB8 WLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGY----KPPDEGPS
       ::::.:..::.  . ..:  ::::.:: .... ::: . :::    ..    . : .  :
CCDS46 WLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFRLINANMMVLGHEPRQTTS
              130       140       150        160       170         

             210         220       230       240       250         
pF1KB8 EYQTIPLNKIEDFGVH--CKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA
       .   .   .:. . .:   ..::.. ..: :. :..:.:  : .: :.. :      :  
CCDS46 NLGHLNKPSIQAL-IHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGL------TLQ
     180       190        200       210       220             230  

     260       270       280       290       300       310         
pF1KB8 DYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLM
       ::.  .    .:.. .   .:.. ..  ..: .:. . ..::                  
CCDS46 DYS--EHCKHNESVVKEMLELAK-NYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVD
              240       250        260       270       280         

     320       330          
pF1KB8 SQVIKDKLFNQINIS      
                            
CCDS46 VLMTSNIVQCLAAMLDTVVFK
     290       300       310




334 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:56:22 2016 done: Fri Nov  4 10:56:22 2016
 Total Scan time:  2.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]