FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8251, 227 aa
  1>>>pF1KB8251 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3863+/-0.000998; mu= 9.0012+/- 0.060
 mean_var=91.7153+/-18.298, 0's: 0 Z-trim(106.3): 22  B-trim: 11 in 1/48
 Lambda= 0.133922
 statistics sampled from 8868 (8878) to 8868 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.273), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS8990.1 YEATS4 gene_id:8089|Hs108|chr12         ( 227) 1483 296.5 9.6e-81
CCDS73495.1 YEATS4 gene_id:8089|Hs108|chr12        ( 173)  731 151.1 4.2e-37


>>CCDS8990.1 YEATS4 gene_id:8089|Hs108|chr12              (227 aa)
 initn: 1483 init1: 1483 opt: 1483  Z-score: 1563.1  bits: 296.5 E(32554): 9.6e-81
Smith-Waterman score: 1483; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KB8 MFKRMAEFGPDSGGRVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MFKRMAEFGPDSGGRVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFIDPNERPVTLYHLLKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 AYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFIDPNERPVTLYHLLKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FQSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLLTTSRQLTLGAYKHETEFAELEVKTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 FQSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLLTTSRQLTLGAYKHETEFAELEVKTR
              130       140       150       160       170       180

              190       200       210       220       
pF1KB8 EKLEAAKKKTSFEIAELKERLKASRETINCLKNEIRKLEEDDQAKDI
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EKLEAAKKKTSFEIAELKERLKASRETINCLKNEIRKLEEDDQAKDI
              190       200       210       220       

>>CCDS73495.1 YEATS4 gene_id:8089|Hs108|chr12             (173 aa)
 initn: 729 init1: 729 opt: 731  Z-score: 779.7  bits: 151.1 E(32554): 4.2e-37
Smith-Waterman score: 996; 76.2% identity (76.2% similar) in 227 aa overlap (1-227:1-173)

               10        20        30        40        50        60
pF1KB8 MFKRMAEFGPDSGGRVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS73 MFKRMAEFGPDSGGRVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNE---
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB8 AYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFIDPNERPVTLYHLLKL
                                                          :::::::::
CCDS73 ---------------------------------------------------VTLYHLLKL
                                                           60      

              130       140       150       160       170       180
pF1KB8 FQSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLLTTSRQLTLGAYKHETEFAELEVKTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FQSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLLTTSRQLTLGAYKHETEFAELEVKTR
         70        80        90       100       110       120      

              190       200       210       220       
pF1KB8 EKLEAAKKKTSFEIAELKERLKASRETINCLKNEIRKLEEDDQAKDI
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EKLEAAKKKTSFEIAELKERLKASRETINCLKNEIRKLEEDDQAKDI
        130       140       150       160       170   




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:02:08 2016 done: Fri Nov  4 11:02:08 2016
 Total Scan time:  1.830 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]