FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8252, 335 aa
  1>>>pF1KB8252 335 - 335 aa - 335 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3532+/-0.00109; mu= 15.3378+/- 0.065
 mean_var=58.0111+/-11.458, 0's: 0 Z-trim(101.2): 33  B-trim: 0 in 0/50
 Lambda= 0.168391
 statistics sampled from 6427 (6434) to 6427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.198), width:  16
 Scan time:  1.330

The best scores are:                                      opt bits E(32554)
CCDS8549.1 GAPDH gene_id:2597|Hs108|chr12          ( 335) 2198 542.6 1.6e-154
CCDS58201.1 GAPDH gene_id:2597|Hs108|chr12         ( 293) 1925 476.3 1.3e-134
CCDS12465.1 GAPDHS gene_id:26330|Hs108|chr19       ( 408) 1538 382.3 3.6e-106


>>CCDS8549.1 GAPDH gene_id:2597|Hs108|chr12               (335 aa)
 initn: 2198 init1: 2198 opt: 2198  Z-score: 2887.5  bits: 542.6 E(32554): 1.6e-154
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KB8 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG
              250       260       270       280       290       300

              310       320       330     
pF1KB8 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
       :::::::::::::::::::::::::::::::::::
CCDS85 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
              310       320       330     

>>CCDS58201.1 GAPDH gene_id:2597|Hs108|chr12              (293 aa)
 initn: 1925 init1: 1925 opt: 1925  Z-score: 2530.0  bits: 476.3 E(32554): 1.3e-134
Smith-Waterman score: 1925; 100.0% identity (100.0% similar) in 293 aa overlap (43-335:1-293)

             20        30        40        50        60        70  
pF1KB8 RIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGN
                                     ::::::::::::::::::::::::::::::
CCDS58                               MVYMFQYDSTHGKFHGTVKAENGKLVINGN
                                             10        20        30

             80        90       100       110       120       130  
pF1KB8 PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFV
               40        50        60        70        80        90

            140       150       160       170       180       190  
pF1KB8 MGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPS
              100       110       120       130       140       150

            200       210       220       230       240       250  
pF1KB8 GKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKP
              160       170       180       190       200       210

            260       270       280       290       300       310  
pF1KB8 AKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLIS
              220       230       240       250       260       270

            320       330     
pF1KB8 WYDNEFGYSNRVVDLMAHMASKE
       :::::::::::::::::::::::
CCDS58 WYDNEFGYSNRVVDLMAHMASKE
              280       290   

>>CCDS12465.1 GAPDHS gene_id:26330|Hs108|chr19            (408 aa)
 initn: 1436 init1: 985 opt: 1538  Z-score: 2019.6  bits: 382.3 E(32554): 3.6e-106
Smith-Waterman score: 1538; 68.3% identity (88.9% similar) in 334 aa overlap (3-335:75-407)

                                           10        20        30  
pF1KB8                             MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVA
                                     .. ::.:::::::::: :: ...: : .::
CCDS12 TPVREEIKPPPPPLPPHPATPPPKMVSVARELTVGINGFGRIGRLVLRACMEKG-VKVVA
           50        60        70        80        90        100   

             40        50        60        70        80        90  
pF1KB8 INDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGA
       .:::::: .::::::.::::::...:.:. .::.::.... :...: ..:..: :  .:.
CCDS12 VNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCKEPKQIPWRAVGS
           110       120       130       140       150       160   

            100       110       120       130       140        150 
pF1KB8 EYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYD-NSLKIISNAS
        ::::::::. ... :. :...::.::.::::: ::::::::::.. :. .:..:.::::
CCDS12 PYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNAS
           170       180       190       200       210       220   

             160       170       180       190       200       210 
pF1KB8 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST
       ::::::::::::::. ::::::::::::. ::::::::::: : ::::::: ::::::::
CCDS12 CTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPAST
           230       240       250       260       270       280   

             220       230       240       250       260       270 
pF1KB8 GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK
       :::::: ::::::.:::::::::::: .:::::::::: .:: :. ::..:: :..::. 
CCDS12 GAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMA
           290       300       310       320       330       340   

             280       290       300       310       320       330 
pF1KB8 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHM
       :::.::: .:::.:: .::::: ::: :::::::.:::::::::::.:::.:::::. .:
CCDS12 GILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM
           350       360       370       380       390       400   

            
pF1KB8 ASKE 
        :.. 
CCDS12 FSRDK
            




335 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:02:51 2016 done: Fri Nov  4 11:02:51 2016
 Total Scan time:  1.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]