Result of FASTA (omim) for
pF1KB8252
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8252, 335 aa
1>>>pF1KB8252 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1876+/-0.000475; mu= 16.5169+/- 0.029
mean_var=60.5133+/-12.169, 0's: 0 Z-trim(107.9): 48 B-trim: 221 in 2/52
Lambda= 0.164873
statistics sampled from 15987 (16010) to 15987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.545), E-opt: 0.2 (0.188), width: 16
Scan time: 4.270
The best scores are: opt bits E(85289)
NP_001276675 (OMIM: 138400) glyceraldehyde-3-phosp ( 335) 2198 531.7 8.2e-151
NP_002037 (OMIM: 138400) glyceraldehyde-3-phosphat ( 335) 2198 531.7 8.2e-151
NP_001276674 (OMIM: 138400) glyceraldehyde-3-phosp ( 335) 2198 531.7 8.2e-151
NP_001243728 (OMIM: 138400) glyceraldehyde-3-phosp ( 293) 1925 466.8 2.6e-131
NP_055179 (OMIM: 609169) glyceraldehyde-3-phosphat ( 408) 1538 374.8 1.8e-103
XP_016882068 (OMIM: 609169) PREDICTED: glyceraldeh ( 344) 998 246.3 7e-65
>>NP_001276675 (OMIM: 138400) glyceraldehyde-3-phosphate (335 aa)
initn: 2198 init1: 2198 opt: 2198 Z-score: 2828.6 bits: 531.7 E(85289): 8.2e-151
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB8 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG
250 260 270 280 290 300
310 320 330
pF1KB8 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
:::::::::::::::::::::::::::::::::::
NP_001 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
310 320 330
>>NP_002037 (OMIM: 138400) glyceraldehyde-3-phosphate de (335 aa)
initn: 2198 init1: 2198 opt: 2198 Z-score: 2828.6 bits: 531.7 E(85289): 8.2e-151
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB8 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG
250 260 270 280 290 300
310 320 330
pF1KB8 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
:::::::::::::::::::::::::::::::::::
NP_002 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
310 320 330
>>NP_001276674 (OMIM: 138400) glyceraldehyde-3-phosphate (335 aa)
initn: 2198 init1: 2198 opt: 2198 Z-score: 2828.6 bits: 531.7 E(85289): 8.2e-151
Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB8 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG
250 260 270 280 290 300
310 320 330
pF1KB8 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
:::::::::::::::::::::::::::::::::::
NP_001 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
310 320 330
>>NP_001243728 (OMIM: 138400) glyceraldehyde-3-phosphate (293 aa)
initn: 1925 init1: 1925 opt: 1925 Z-score: 2478.5 bits: 466.8 E(85289): 2.6e-131
Smith-Waterman score: 1925; 100.0% identity (100.0% similar) in 293 aa overlap (43-335:1-293)
20 30 40 50 60 70
pF1KB8 RIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGN
::::::::::::::::::::::::::::::
NP_001 MVYMFQYDSTHGKFHGTVKAENGKLVINGN
10 20 30
80 90 100 110 120 130
pF1KB8 PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFV
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 MGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 GKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKP
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 AKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLIS
220 230 240 250 260 270
320 330
pF1KB8 WYDNEFGYSNRVVDLMAHMASKE
:::::::::::::::::::::::
NP_001 WYDNEFGYSNRVVDLMAHMASKE
280 290
>>NP_055179 (OMIM: 609169) glyceraldehyde-3-phosphate de (408 aa)
initn: 1436 init1: 985 opt: 1538 Z-score: 1978.8 bits: 374.8 E(85289): 1.8e-103
Smith-Waterman score: 1538; 68.3% identity (88.9% similar) in 334 aa overlap (3-335:75-407)
10 20 30
pF1KB8 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVA
.. ::.:::::::::: :: ...: : .::
NP_055 TPVREEIKPPPPPLPPHPATPPPKMVSVARELTVGINGFGRIGRLVLRACMEKG-VKVVA
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 INDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGA
.:::::: .::::::.::::::...:.:. .::.::.... :...: ..:..: : .:.
NP_055 VNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCKEPKQIPWRAVGS
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 EYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYD-NSLKIISNAS
::::::::. ... :. :...::.::.::::: ::::::::::.. :. .:..:.::::
NP_055 PYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNAS
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST
::::::::::::::. ::::::::::::. ::::::::::: : ::::::: ::::::::
NP_055 CTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPAST
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK
:::::: ::::::.:::::::::::: .:::::::::: .:: :. ::..:: :..::.
NP_055 GAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMA
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB8 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHM
:::.::: .:::.:: .::::: ::: :::::::.:::::::::::.:::.:::::. .:
NP_055 GILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM
350 360 370 380 390 400
pF1KB8 ASKE
:..
NP_055 FSRDK
>>XP_016882068 (OMIM: 609169) PREDICTED: glyceraldehyde- (344 aa)
initn: 918 init1: 467 opt: 998 Z-score: 1285.8 bits: 246.3 E(85289): 7e-65
Smith-Waterman score: 998; 67.3% identity (88.6% similar) in 220 aa overlap (8-226:79-297)
10 20 30
pF1KB8 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPF
: ::::::::: :: ...: : .::.::::
XP_016 VQANDNLIRGHVEARHRPHQCHRCPVAATAVPGFGRIGRLVLRACMEKG-VKVVAVNDPF
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 IDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVE
:: .::::::.::::::...:.:. .::.::.... :...: ..:..: : .:. ::::
XP_016 IDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVE
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB8 STGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYD-NSLKIISNASCTTNC
::::. ... :. :...::.::.::::: ::::::::::.. :. .:..:.:::::::::
XP_016 STGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNC
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB8 LAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKA
:::::::::. ::::::::::::. ::::::::::: : ::::::: :::::::::::::
XP_016 LAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKA
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB8 VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY
: ::::::.:
XP_016 VTKVIPELKGYEDKKLQPGWGHTPGGLDWPGPQSLRGKQGPGPATGKGGMEGNVPKF
290 300 310 320 330 340
335 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:02:52 2016 done: Fri Nov 4 11:02:52 2016
Total Scan time: 4.270 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]