FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8253, 76 aa
  1>>>pF1KB8253 76 - 76 aa - 76 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1853+/-0.000584; mu= 7.4381+/- 0.035
 mean_var=49.9764+/- 9.876, 0's: 0 Z-trim(110.4): 17  B-trim: 2 in 1/50
 Lambda= 0.181423
 statistics sampled from 11575 (11589) to 11575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.356), width:  16
 Scan time:  1.160

The best scores are:                                      opt bits E(32554)
CCDS46493.1 SUMO1 gene_id:7341|Hs108|chr2          (  76)  505 139.2 2.4e-34
CCDS2352.1 SUMO1 gene_id:7341|Hs108|chr2           ( 101)  485 134.0 1.2e-32
CCDS45774.1 SUMO2 gene_id:6613|Hs108|chr17         (  95)  254 73.5 1.8e-14
CCDS33587.1 SUMO3 gene_id:6612|Hs108|chr21         ( 103)  254 73.5 1.9e-14
CCDS34549.1 SUMO4 gene_id:387082|Hs108|chr6        (  95)  214 63.0 2.5e-11


>>CCDS46493.1 SUMO1 gene_id:7341|Hs108|chr2               (76 aa)
 initn: 505 init1: 505 opt: 505  Z-score: 730.1  bits: 139.2 E(32554): 2.4e-34
Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB8 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE
               10        20        30        40        50        60

               70      
pF1KB8 DVIEVYQEQTGGHSTV
       ::::::::::::::::
CCDS46 DVIEVYQEQTGGHSTV
               70      

>>CCDS2352.1 SUMO1 gene_id:7341|Hs108|chr2                (101 aa)
 initn: 485 init1: 485 opt: 485  Z-score: 699.7  bits: 134.0 E(32554): 1.2e-32
Smith-Waterman score: 485; 100.0% identity (100.0% similar) in 73 aa overlap (4-76:29-101)

                                        10        20        30     
pF1KB8                          MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
                                   ::::::::::::::::::::::::::::::::
CCDS23 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
               10        20        30        40        50        60

          40        50        60        70      
pF1KB8 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
       :::::::::::::::::::::::::::::::::::::::::
CCDS23 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
               70        80        90       100 

>>CCDS45774.1 SUMO2 gene_id:6613|Hs108|chr17              (95 aa)
 initn: 254 init1: 254 opt: 254  Z-score: 373.4  bits: 73.5 E(32554): 1.8e-14
Smith-Waterman score: 254; 50.0% identity (80.6% similar) in 72 aa overlap (1-72:22-93)

                                    10        20        30         
pF1KB8                      MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF
                            .. ::.: ..::.:  : :.:: ..::.:::. : ..::
CCDS45 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
               10        20        30        40        50        60

      40        50        60        70      
pF1KB8 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
        :.:: : .. :: .: ::.::.:.:.:.::::    
CCDS45 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY  
               70        80        90       

>>CCDS33587.1 SUMO3 gene_id:6612|Hs108|chr21              (103 aa)
 initn: 254 init1: 254 opt: 254  Z-score: 372.8  bits: 73.5 E(32554): 1.9e-14
Smith-Waterman score: 254; 50.0% identity (80.6% similar) in 72 aa overlap (1-72:21-92)

                                   10        20        30        40
pF1KB8                     MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL
                           .. ::.: ..::.:  : :.:: ..::.:::. : ..:: 
CCDS33 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
               10        20        30        40        50        60

               50        60        70             
pF1KB8 FEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV       
       :.:: : .. :: .: ::.::.:.:.:.::::           
CCDS33 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF
               70        80        90       100   

>>CCDS34549.1 SUMO4 gene_id:387082|Hs108|chr6             (95 aa)
 initn: 214 init1: 214 opt: 214  Z-score: 316.8  bits: 63.0 E(32554): 2.5e-11
Smith-Waterman score: 214; 43.1% identity (76.4% similar) in 72 aa overlap (1-72:22-93)

                                    10        20        30         
pF1KB8                      MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF
                            .. ::.: ..::.:  : :.:: ..::. .:. ....::
CCDS34 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
               10        20        30        40        50        60

      40        50        60        70      
pF1KB8 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
        : :: :. .  : .: ::.::.:.:.:. :::    
CCDS34 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY  
               70        80        90       




76 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:54:25 2016 done: Sat Nov  5 20:54:25 2016
 Total Scan time:  1.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]