FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8253, 76 aa
  1>>>pF1KB8253 76 - 76 aa - 76 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2651+/-0.000279; mu= 7.1391+/- 0.017
 mean_var=53.0597+/-10.367, 0's: 0 Z-trim(117.4): 16  B-trim: 0 in 0/54
 Lambda= 0.176073
 statistics sampled from 29381 (29396) to 29381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.345), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(85289)
NP_001005782 (OMIM: 601912,613705) small ubiquitin (  76)  505 135.5 7.8e-33
NP_003343 (OMIM: 601912,613705) small ubiquitin-re ( 101)  485 130.5 3.4e-31
NP_001005781 (OMIM: 601912,613705) small ubiquitin ( 101)  485 130.5 3.4e-31
NP_008868 (OMIM: 603042) small ubiquitin-related m (  95)  254 71.8 1.5e-13
NP_008867 (OMIM: 602231) small ubiquitin-related m ( 103)  254 71.8 1.6e-13
NP_001002255 (OMIM: 600320,608829) small ubiquitin (  95)  214 61.6 1.7e-10
NP_001273345 (OMIM: 602231) small ubiquitin-relate ( 141)  157 47.2 5.6e-06


>>NP_001005782 (OMIM: 601912,613705) small ubiquitin-rel  (76 aa)
 initn: 505 init1: 505 opt: 505  Z-score: 710.5  bits: 135.5 E(85289): 7.8e-33
Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB8 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE
               10        20        30        40        50        60

               70      
pF1KB8 DVIEVYQEQTGGHSTV
       ::::::::::::::::
NP_001 DVIEVYQEQTGGHSTV
               70      

>>NP_003343 (OMIM: 601912,613705) small ubiquitin-relate  (101 aa)
 initn: 485 init1: 485 opt: 485  Z-score: 681.0  bits: 130.5 E(85289): 3.4e-31
Smith-Waterman score: 485; 100.0% identity (100.0% similar) in 73 aa overlap (4-76:29-101)

                                        10        20        30     
pF1KB8                          MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
                                   ::::::::::::::::::::::::::::::::
NP_003 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
               10        20        30        40        50        60

          40        50        60        70      
pF1KB8 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
       :::::::::::::::::::::::::::::::::::::::::
NP_003 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
               70        80        90       100 

>>NP_001005781 (OMIM: 601912,613705) small ubiquitin-rel  (101 aa)
 initn: 485 init1: 485 opt: 485  Z-score: 681.0  bits: 130.5 E(85289): 3.4e-31
Smith-Waterman score: 485; 100.0% identity (100.0% similar) in 73 aa overlap (4-76:29-101)

                                        10        20        30     
pF1KB8                          MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
                                   ::::::::::::::::::::::::::::::::
NP_001 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
               10        20        30        40        50        60

          40        50        60        70      
pF1KB8 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
       :::::::::::::::::::::::::::::::::::::::::
NP_001 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
               70        80        90       100 

>>NP_008868 (OMIM: 603042) small ubiquitin-related modif  (95 aa)
 initn: 254 init1: 254 opt: 254  Z-score: 364.3  bits: 71.8 E(85289): 1.5e-13
Smith-Waterman score: 254; 50.0% identity (80.6% similar) in 72 aa overlap (1-72:22-93)

                                    10        20        30         
pF1KB8                      MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF
                            .. ::.: ..::.:  : :.:: ..::.:::. : ..::
NP_008 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
               10        20        30        40        50        60

      40        50        60        70      
pF1KB8 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
        :.:: : .. :: .: ::.::.:.:.:.::::    
NP_008 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY  
               70        80        90       

>>NP_008867 (OMIM: 602231) small ubiquitin-related modif  (103 aa)
 initn: 254 init1: 254 opt: 254  Z-score: 363.7  bits: 71.8 E(85289): 1.6e-13
Smith-Waterman score: 254; 50.0% identity (80.6% similar) in 72 aa overlap (1-72:21-92)

                                   10        20        30        40
pF1KB8                     MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL
                           .. ::.: ..::.:  : :.:: ..::.:::. : ..:: 
NP_008 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
               10        20        30        40        50        60

               50        60        70             
pF1KB8 FEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV       
       :.:: : .. :: .: ::.::.:.:.:.::::           
NP_008 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF
               70        80        90       100   

>>NP_001002255 (OMIM: 600320,608829) small ubiquitin-rel  (95 aa)
 initn: 214 init1: 214 opt: 214  Z-score: 309.4  bits: 61.6 E(85289): 1.7e-10
Smith-Waterman score: 214; 43.1% identity (76.4% similar) in 72 aa overlap (1-72:22-93)

                                    10        20        30         
pF1KB8                      MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF
                            .. ::.: ..::.:  : :.:: ..::. .:. ....::
NP_001 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
               10        20        30        40        50        60

      40        50        60        70      
pF1KB8 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
        : :: :. .  : .: ::.::.:.:.:. :::    
NP_001 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY  
               70        80        90       

>>NP_001273345 (OMIM: 602231) small ubiquitin-related mo  (141 aa)
 initn: 157 init1: 157 opt: 157  Z-score: 228.3  bits: 47.2 E(85289): 5.6e-06
Smith-Waterman score: 157; 51.2% identity (81.4% similar) in 43 aa overlap (30-72:88-130)

                10        20        30        40        50         
pF1KB8  MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEE
                                     .:. : ..:: :.:: : .. :: .: ::.
NP_001 QSLPVCALVLCVPGIPRARASRGWTQMQLPEGLSMRQIRFRFDGQPINETDTPAQLEMED
        60        70        80        90       100       110       

      60        70             
pF1KB8 EDVIEVYQEQTGGHSTV       
       ::.:.:.:.::::           
NP_001 EDTIDVFQQQTGGVPESSLAGHSF
       120       130       140 




76 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:54:25 2016 done: Sat Nov  5 20:54:26 2016
 Total Scan time:  3.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]