FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8261, 155 aa
  1>>>pF1KB8261 155 - 155 aa - 155 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1051+/- 0.001; mu= 13.2983+/- 0.060
 mean_var=62.6808+/-13.155, 0's: 0 Z-trim(103.8): 19  B-trim: 0 in 0/47
 Lambda= 0.161997
 statistics sampled from 7593 (7605) to 7593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.588), E-opt: 0.2 (0.234), width:  16
 Scan time:  1.230

The best scores are:                                      opt bits E(32554)
CCDS10470.1 ATP6V0C gene_id:527|Hs108|chr16        ( 155)  943 228.7 1.1e-60


>>CCDS10470.1 ATP6V0C gene_id:527|Hs108|chr16             (155 aa)
 initn: 943 init1: 943 opt: 943  Z-score: 1203.1  bits: 228.7 E(32554): 1.1e-60
Smith-Waterman score: 943; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)

               10        20        30        40        50        60
pF1KB8 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG
               70        80        90       100       110       120

              130       140       150     
pF1KB8 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
       :::::::::::::::::::::::::::::::::::
CCDS10 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
              130       140       150     




155 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:07:13 2016 done: Fri Nov  4 11:07:13 2016
 Total Scan time:  1.230 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]