Result of FASTA (omim) for
pF1KB8261
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8261, 155 aa
1>>>pF1KB8261 155 - 155 aa - 155 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0362+/-0.000417; mu= 13.6266+/- 0.026
mean_var=61.1193+/-12.936, 0's: 0 Z-trim(109.9): 29 B-trim: 0 in 0/54
Lambda= 0.164053
statistics sampled from 18103 (18126) to 18103 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.561), E-opt: 0.2 (0.213), width: 16
Scan time: 4.880
The best scores are: opt bits E(85289)
NP_001685 (OMIM: 108745) V-type proton ATPase 16 k ( 155) 943 231.6 4e-61
NP_001185498 (OMIM: 108745) V-type proton ATPase 1 ( 155) 943 231.6 4e-61
NP_004038 (OMIM: 603717) V-type proton ATPase 21 k ( 205) 207 57.4 1.4e-08
NP_001034546 (OMIM: 603717) V-type proton ATPase 2 ( 158) 204 56.7 1.8e-08
NP_001281262 (OMIM: 603717) V-type proton ATPase 2 ( 261) 202 56.3 3.8e-08
NP_001002258 (OMIM: 602736) ATP synthase F(0) comp ( 142) 123 37.5 0.0098
NP_001680 (OMIM: 602736) ATP synthase F(0) complex ( 142) 123 37.5 0.0098
>>NP_001685 (OMIM: 108745) V-type proton ATPase 16 kDa p (155 aa)
initn: 943 init1: 943 opt: 943 Z-score: 1218.4 bits: 231.6 E(85289): 4e-61
Smith-Waterman score: 943; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)
10 20 30 40 50 60
pF1KB8 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG
70 80 90 100 110 120
130 140 150
pF1KB8 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
:::::::::::::::::::::::::::::::::::
NP_001 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
130 140 150
>>NP_001185498 (OMIM: 108745) V-type proton ATPase 16 kD (155 aa)
initn: 943 init1: 943 opt: 943 Z-score: 1218.4 bits: 231.6 E(85289): 4e-61
Smith-Waterman score: 943; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155)
10 20 30 40 50 60
pF1KB8 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG
70 80 90 100 110 120
130 140 150
pF1KB8 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
:::::::::::::::::::::::::::::::::::
NP_001 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
130 140 150
>>NP_004038 (OMIM: 603717) V-type proton ATPase 21 kDa p (205 aa)
initn: 332 init1: 192 opt: 207 Z-score: 275.1 bits: 57.4 E(85289): 1.4e-08
Smith-Waterman score: 299; 32.9% identity (71.1% similar) in 149 aa overlap (17-155:52-200)
10 20 30 40
pF1KB8 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSV
.: . :. .:..:::.: .:..: . .:
NP_004 VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV
30 40 50 60 70 80
50 60 70 80 90
pF1KB8 MRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAN-----SLNDDISL-----YKSFLQLGAG
:. :... ... .::::...:..:.: : .: .. . .. ..:::
NP_004 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAG
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 LSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
:.::::.: : .::::.... . ::.: ::: .... ::. ..::.:.:::.. ...
NP_004 LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRV
150 160 170 180 190 200
NP_004 KMGD
>>NP_001034546 (OMIM: 603717) V-type proton ATPase 21 kD (158 aa)
initn: 332 init1: 192 opt: 204 Z-score: 273.0 bits: 56.7 E(85289): 1.8e-08
Smith-Waterman score: 299; 32.9% identity (71.1% similar) in 149 aa overlap (17-155:5-153)
10 20 30 40 50 60
pF1KB8 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
.: . :. .:..:::.: .:..: . .: :. :... ..
NP_001 MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSII
10 20 30 40
70 80 90 100 110
pF1KB8 MAGIIAIYGLVVAVLIAN-----SLNDDISL-----YKSFLQLGAGLSVGLSGLAAGFAI
. .::::...:..:.: : .: .. . .. ..::::.::::.: : .
NP_001 FCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCV
50 60 70 80 90 100
120 130 140 150
pF1KB8 GIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
::::.... . ::.: ::: .... ::. ..::.:.:::.. ...
NP_001 GIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD
110 120 130 140 150
>>NP_001281262 (OMIM: 603717) V-type proton ATPase 21 kD (261 aa)
initn: 327 init1: 187 opt: 202 Z-score: 267.2 bits: 56.3 E(85289): 3.8e-08
Smith-Waterman score: 294; 33.8% identity (71.0% similar) in 145 aa overlap (17-151:52-196)
10 20 30 40
pF1KB8 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSV
.: . :. .:..:::.: .:..: . .:
NP_001 VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV
30 40 50 60 70 80
50 60 70 80 90
pF1KB8 MRPEQIMKSIIPVVMAGIIAIYGLVVAVLIAN-----SLNDDISL-----YKSFLQLGAG
:. :... ... .::::...:..:.: : .: .. . .. ..:::
NP_001 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAG
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 LSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
:.::::.: : .::::.... . ::.: ::: .... ::. ..::.:.:::..
NP_001 LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQVMNP
150 160 170 180 190 200
NP_001 LGKPLCPCPQPSLTLLLEKLKCSPSLPITIDSPKQLPPPHFHLLVFSYRGSLFLSLIWCH
210 220 230 240 250 260
>>NP_001002258 (OMIM: 602736) ATP synthase F(0) complex (142 aa)
initn: 116 init1: 78 opt: 123 Z-score: 170.1 bits: 37.5 E(85289): 0.0098
Smith-Waterman score: 123; 27.0% identity (56.7% similar) in 141 aa overlap (17-152:1-138)
10 20 30 40 50 60
pF1KB8 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
: : : .. . :. . :.: . ::: . .:
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTV
10 20 30 40
70 80 90 100 110
pF1KB8 MAGII-AIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR
. : .. :. . ..... ::. .:. ::. .::..: .:: :: : . .
NP_001 FNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLII
50 60 70 80 90 100
120 130 140 150
pF1KB8 GTAQQP----RLFVGMILILIFAEVLGLYGLIVALILSTK
: :..: .:: :: . ..:..::. :.::...
NP_001 GYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
110 120 130 140
>>NP_001680 (OMIM: 602736) ATP synthase F(0) complex sub (142 aa)
initn: 116 init1: 78 opt: 123 Z-score: 170.1 bits: 37.5 E(85289): 0.0098
Smith-Waterman score: 123; 27.0% identity (56.7% similar) in 141 aa overlap (17-152:1-138)
10 20 30 40 50 60
pF1KB8 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
: : : .. . :. . :.: . ::: . .:
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTV
10 20 30 40
70 80 90 100 110
pF1KB8 MAGII-AIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR
. : .. :. . ..... ::. .:. ::. .::..: .:: :: : . .
NP_001 FNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLII
50 60 70 80 90 100
120 130 140 150
pF1KB8 GTAQQP----RLFVGMILILIFAEVLGLYGLIVALILSTK
: :..: .:: :: . ..:..::. :.::...
NP_001 GYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
110 120 130 140
155 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:07:13 2016 done: Fri Nov 4 11:07:14 2016
Total Scan time: 4.880 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]