FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8264, 210 aa
  1>>>pF1KB8264 210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4821+/-0.000847; mu= 13.1968+/- 0.051
 mean_var=68.5156+/-13.520, 0's: 0 Z-trim(106.4): 20  B-trim: 0 in 0/52
 Lambda= 0.154946
 statistics sampled from 8959 (8967) to 8959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.275), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS12056.1 POLR2E gene_id:5434|Hs108|chr19        ( 210) 1370 314.9 2.4e-86


>>CCDS12056.1 POLR2E gene_id:5434|Hs108|chr19             (210 aa)
 initn: 1370 init1: 1370 opt: 1370  Z-score: 1663.8  bits: 314.9 E(32554): 2.4e-86
Smith-Waterman score: 1370; 99.5% identity (99.5% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB8 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS12 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
              130       140       150       160       170       180

              190       200       210
pF1KB8 RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
       ::::::::::::::::::::::::::::::
CCDS12 RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
              190       200       210




210 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:09:29 2016 done: Fri Nov  4 11:09:30 2016
 Total Scan time:  1.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]