FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8267, 231 aa
  1>>>pF1KB8267 231 - 231 aa - 231 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9910+/-0.00109; mu= -6.2904+/- 0.066
 mean_var=532.3423+/-109.616, 0's: 0 Z-trim(117.7): 45  B-trim: 199 in 1/53
 Lambda= 0.055588
 statistics sampled from 18443 (18480) to 18443 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.568), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS13027.1 SNRPB gene_id:6628|Hs108|chr20         ( 231) 1650 145.4   3e-35
CCDS13026.1 SNRPB gene_id:6628|Hs108|chr20         ( 240) 1640 144.6 5.3e-35
CCDS10017.1 SNRPN gene_id:6638|Hs108|chr15         ( 240) 1550 137.4 7.9e-33


>>CCDS13027.1 SNRPB gene_id:6628|Hs108|chr20              (231 aa)
 initn: 1650 init1: 1650 opt: 1650  Z-score: 746.4  bits: 145.4 E(32554): 3e-35
Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
              190       200       210       220       230 

>>CCDS13026.1 SNRPB gene_id:6628|Hs108|chr20              (240 aa)
 initn: 1640 init1: 1640 opt: 1640  Z-score: 741.8  bits: 144.6 E(32554): 5.3e-35
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL         
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS13 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP
              190       200       210       220       230       240

>>CCDS10017.1 SNRPN gene_id:6638|Hs108|chr15              (240 aa)
 initn: 1550 init1: 1550 opt: 1550  Z-score: 702.8  bits: 137.4 E(32554): 7.9e-33
Smith-Waterman score: 1550; 92.6% identity (99.1% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
CCDS10 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
       :::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
CCDS10 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
CCDS10 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL         
       :..::::.:.::::::::::::.:.::.::::.:::::::::::::.::           
CCDS10 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
              190       200       210       220       230       240




231 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:13:18 2016 done: Fri Nov  4 11:13:19 2016
 Total Scan time:  2.460 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]