Result of FASTA (omim) for
pF1KB8267
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8267, 231 aa
1>>>pF1KB8267 231 - 231 aa - 231 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.4414+/-0.000433; mu= -14.9996+/- 0.027
mean_var=613.3668+/-128.912, 0's: 0 Z-trim(125.4): 48 B-trim: 893 in 1/60
Lambda= 0.051786
statistics sampled from 48972 (49039) to 48972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.575), width: 16
Scan time: 6.220
The best scores are: opt bits E(85289)
NP_003082 (OMIM: 117650,182282) small nuclear ribo ( 231) 1650 136.7 3.3e-32
NP_937859 (OMIM: 117650,182282) small nuclear ribo ( 240) 1640 135.9 5.6e-32
NP_073716 (OMIM: 176270,182279,209850) small nucle ( 240) 1550 129.2 6e-30
NP_073718 (OMIM: 176270,182279,209850) small nucle ( 240) 1550 129.2 6e-30
NP_073717 (OMIM: 176270,182279,209850) small nucle ( 240) 1550 129.2 6e-30
NP_003088 (OMIM: 176270,182279,209850) small nucle ( 240) 1550 129.2 6e-30
NP_073719 (OMIM: 176270,182279,209850) small nucle ( 240) 1550 129.2 6e-30
>>NP_003082 (OMIM: 117650,182282) small nuclear ribonucl (231 aa)
initn: 1650 init1: 1650 opt: 1650 Z-score: 699.3 bits: 136.7 E(85289): 3.3e-32
Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)
10 20 30 40 50 60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
190 200 210 220 230
>>NP_937859 (OMIM: 117650,182282) small nuclear ribonucl (240 aa)
initn: 1640 init1: 1640 opt: 1640 Z-score: 695.0 bits: 135.9 E(85289): 5.6e-32
Smith-Waterman score: 1640; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_073716 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1550 init1: 1550 opt: 1550 Z-score: 658.7 bits: 129.2 E(85289): 6e-30
Smith-Waterman score: 1550; 92.6% identity (99.1% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
NP_073 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
:::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
NP_073 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
NP_073 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
:..::::.:.::::::::::::.:.::.::::.:::::::::::::.::
NP_073 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_073718 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1550 init1: 1550 opt: 1550 Z-score: 658.7 bits: 129.2 E(85289): 6e-30
Smith-Waterman score: 1550; 92.6% identity (99.1% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
NP_073 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
:::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
NP_073 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
NP_073 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
:..::::.:.::::::::::::.:.::.::::.:::::::::::::.::
NP_073 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_073717 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1550 init1: 1550 opt: 1550 Z-score: 658.7 bits: 129.2 E(85289): 6e-30
Smith-Waterman score: 1550; 92.6% identity (99.1% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
NP_073 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
:::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
NP_073 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
NP_073 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
:..::::.:.::::::::::::.:.::.::::.:::::::::::::.::
NP_073 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_003088 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1550 init1: 1550 opt: 1550 Z-score: 658.7 bits: 129.2 E(85289): 6e-30
Smith-Waterman score: 1550; 92.6% identity (99.1% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
NP_003 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
:::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
NP_003 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
NP_003 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
:..::::.:.::::::::::::.:.::.::::.:::::::::::::.::
NP_003 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
>>NP_073719 (OMIM: 176270,182279,209850) small nuclear r (240 aa)
initn: 1550 init1: 1550 opt: 1550 Z-score: 658.7 bits: 129.2 E(85289): 6e-30
Smith-Waterman score: 1550; 92.6% identity (99.1% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB8 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
NP_073 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
:::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
NP_073 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
NP_073 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL
:..::::.:.::::::::::::.:.::.::::.:::::::::::::.::
NP_073 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
190 200 210 220 230 240
231 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:13:19 2016 done: Fri Nov 4 11:13:20 2016
Total Scan time: 6.220 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]