FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8272, 161 aa
  1>>>pF1KB8272 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7481+/-0.000568; mu= 10.4549+/- 0.034
 mean_var=69.7942+/-14.033, 0's: 0 Z-trim(113.5): 7  B-trim: 521 in 2/50
 Lambda= 0.153520
 statistics sampled from 14109 (14114) to 14109 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.434), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS32374.1 TCEB2 gene_id:6923|Hs108|chr16         ( 161) 1100 251.5 1.6e-67
CCDS45387.1 TCEB2 gene_id:6923|Hs108|chr16         ( 118)  777 180.0 4.2e-46


>>CCDS32374.1 TCEB2 gene_id:6923|Hs108|chr16              (161 aa)
 initn: 1100 init1: 1100 opt: 1100  Z-score: 1325.7  bits: 251.5 E(32554): 1.6e-67
Smith-Waterman score: 1100; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KB8 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVHLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVHLH
               70        80        90       100       110       120

              130       140       150       160 
pF1KB8 VHSQTMAKNRNTSWSQCPGLTACSTREPQDGPTQVHPRWGL
       ::::::::.::::::::::::::::::::::::::::::::
CCDS32 VHSQTMAKSRNTSWSQCPGLTACSTREPQDGPTQVHPRWGL
              130       140       150       160 

>>CCDS45387.1 TCEB2 gene_id:6923|Hs108|chr16              (118 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 941.2  bits: 180.0 E(32554): 4.2e-46
Smith-Waterman score: 777; 99.2% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB8 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVHLH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.  
CCDS45 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ  
               70        80        90       100       110          

              130       140       150       160 
pF1KB8 VHSQTMAKNRNTSWSQCPGLTACSTREPQDGPTQVHPRWGL




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:21:10 2016 done: Sun Nov  6 12:21:11 2016
 Total Scan time:  1.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]