FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8272, 161 aa
  1>>>pF1KB8272 161 - 161 aa - 161 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7420+/-0.000261; mu= 10.6876+/- 0.016
 mean_var=76.8362+/-15.318, 0's: 0 Z-trim(121.1): 17  B-trim: 53 in 1/57
 Lambda= 0.146316
 statistics sampled from 37151 (37174) to 37151 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.436), width:  16
 Scan time:  5.270

The best scores are:                                      opt bits E(85289)
NP_996896 (OMIM: 600787) transcription elongation  ( 161) 1100 240.5   9e-64
NP_009039 (OMIM: 600787) transcription elongation  ( 118)  777 172.2 2.3e-43


>>NP_996896 (OMIM: 600787) transcription elongation fact  (161 aa)
 initn: 1100 init1: 1100 opt: 1100  Z-score: 1265.9  bits: 240.5 E(85289): 9e-64
Smith-Waterman score: 1100; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KB8 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVHLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVHLH
               70        80        90       100       110       120

              130       140       150       160 
pF1KB8 VHSQTMAKNRNTSWSQCPGLTACSTREPQDGPTQVHPRWGL
       ::::::::.::::::::::::::::::::::::::::::::
NP_996 VHSQTMAKSRNTSWSQCPGLTACSTREPQDGPTQVHPRWGL
              130       140       150       160 

>>NP_009039 (OMIM: 600787) transcription elongation fact  (118 aa)
 initn: 777 init1: 777 opt: 777  Z-score: 899.4  bits: 172.2 E(85289): 2.3e-43
Smith-Waterman score: 777; 99.2% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB8 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVHLH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.  
NP_009 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ  
               70        80        90       100       110          

              130       140       150       160 
pF1KB8 VHSQTMAKNRNTSWSQCPGLTACSTREPQDGPTQVHPRWGL




161 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:21:11 2016 done: Sun Nov  6 12:21:12 2016
 Total Scan time:  5.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]