FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8274, 102 aa
  1>>>pF1KB8274 102 - 102 aa - 102 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4175+/-0.000981; mu= -6.1622+/- 0.060
 mean_var=337.0196+/-66.680, 0's: 0 Z-trim(115.3): 11  B-trim: 0 in 0/55
 Lambda= 0.069863
 statistics sampled from 15880 (15886) to 15880 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.488), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS8560.1 PTMS gene_id:5763|Hs108|chr12           ( 102)  627 74.6 1.2e-14


>>CCDS8560.1 PTMS gene_id:5763|Hs108|chr12                (102 aa)
 initn: 627 init1: 627 opt: 627  Z-score: 376.8  bits: 74.6 E(32554): 1.2e-14
Smith-Waterman score: 627; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KB8 MSEKSVEAAAELSAKDLKEKKEKVEEKASRKERKKEVVEEEENGAEEEEEETAEDGEEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MSEKSVEAAAELSAKDLKEKKEKVEEKASRKERKKEVVEEEENGAEEEEEETAEDGEEED
               10        20        30        40        50        60

               70        80        90       100  
pF1KB8 EGEEEDEEEEEEDDEGPALKRAAEEEDEADPKRQKTENGASA
       ::::::::::::::::::::::::::::::::::::::::::
CCDS85 EGEEEDEEEEEEDDEGPALKRAAEEEDEADPKRQKTENGASA
               70        80        90       100  




102 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:17:50 2016 done: Fri Nov  4 11:17:50 2016
 Total Scan time:  1.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]