FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8276, 139 aa
  1>>>pF1KB8276 139 - 139 aa - 139 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7906+/-0.000737; mu= 11.3115+/- 0.045
 mean_var=126.0525+/-25.612, 0's: 0 Z-trim(113.2): 19  B-trim: 0 in 0/54
 Lambda= 0.114235
 statistics sampled from 13820 (13834) to 13820 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.425), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS12374.1 LSM4 gene_id:25804|Hs108|chr19         ( 139)  973 170.1   4e-43
CCDS62601.1 LSM4 gene_id:25804|Hs108|chr19         ( 125)  881 154.9 1.4e-38


>>CCDS12374.1 LSM4 gene_id:25804|Hs108|chr19              (139 aa)
 initn: 973 init1: 973 opt: 973  Z-score: 887.8  bits: 170.1 E(32554): 4e-43
Smith-Waterman score: 973; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB8 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
               70        80        90       100       110       120

              130         
pF1KB8 PGTGRGQPEKKPGRQAGKQ
       :::::::::::::::::::
CCDS12 PGTGRGQPEKKPGRQAGKQ
              130         

>>CCDS62601.1 LSM4 gene_id:25804|Hs108|chr19              (125 aa)
 initn: 881 init1: 881 opt: 881  Z-score: 806.4  bits: 154.9 E(32554): 1.4e-38
Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 125 aa overlap (15-139:1-125)

               10        20        30        40        50        60
pF1KB8 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS62               MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
         50        60        70        80        90       100      

              130         
pF1KB8 PGTGRGQPEKKPGRQAGKQ
       :::::::::::::::::::
CCDS62 PGTGRGQPEKKPGRQAGKQ
        110       120     




139 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:18:52 2016 done: Fri Nov  4 11:18:52 2016
 Total Scan time:  1.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]