FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8284, 412 aa
  1>>>pF1KB8284 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0429+/-0.000758; mu= 10.7574+/- 0.046
 mean_var=131.3184+/-26.636, 0's: 0 Z-trim(114.2): 37  B-trim: 339 in 1/50
 Lambda= 0.111921
 statistics sampled from 14717 (14750) to 14717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.453), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS2565.1 BHLHE40 gene_id:8553|Hs108|chr3         ( 412) 2800 462.9 2.5e-130
CCDS8706.1 BHLHE41 gene_id:79365|Hs108|chr12       ( 482)  764 134.2 2.6e-31


>>CCDS2565.1 BHLHE40 gene_id:8553|Hs108|chr3              (412 aa)
 initn: 2800 init1: 2800 opt: 2800  Z-score: 2453.2  bits: 462.9 E(32554): 2.5e-130
Smith-Waterman score: 2800; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB8 MERIPSAQPPPACLPKAPGLEHGDLPGMYPAHMYQVYKSRRGIKRSEDSKETYKLPHRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MERIPSAQPPPACLPKAPGLEHGDLPGMYPAHMYQVYKSRRGIKRSEDSKETYKLPHRLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALTNLIDQQQQKIIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALTNLIDQQQQKIIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LQSGLQAGELSGRNVETGQEMFCSGFQTCAREVLQYLAKHENTRDLKSSQLVTHLHRVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 LQSGLQAGELSGRNVETGQEMFCSGFQTCAREVLQYLAKHENTRDLKSSQLVTHLHRVVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ELLQGGTSRKPSDPAPKVMDFKEKPSSPAKGSEGPGKNCVPVIQRTFAHSSGEQSGSDTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 ELLQGGTSRKPSDPAPKVMDFKEKPSSPAKGSEGPGKNCVPVIQRTFAHSSGEQSGSDTD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TDSGYGGESEKGDLRSEQPCFKSDHGRRFTMGERIGAIKQESEEPPTKKNRMQLSDDEGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TDSGYGGESEKGDLRSEQPCFKSDHGRRFTMGERIGAIKQESEEPPTKKNRMQLSDDEGH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 FTSSDLISSPFLGPHPHQPPFCLPFYLIPPSATAYLPMLEKCWYPTSVPVLYPGLNASAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 FTSSDLISSPFLGPHPHQPPFCLPFYLIPPSATAYLPMLEKCWYPTSVPVLYPGLNASAA
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB8 ALSSFMNPDKISAPLLMPQRLPSPLPAHPSVDSSVLLQALKPIPPLNLETKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 ALSSFMNPDKISAPLLMPQRLPSPLPAHPSVDSSVLLQALKPIPPLNLETKD
              370       380       390       400       410  

>>CCDS8706.1 BHLHE41 gene_id:79365|Hs108|chr12            (482 aa)
 initn: 823 init1: 447 opt: 764  Z-score: 675.5  bits: 134.2 E(32554): 2.6e-31
Smith-Waterman score: 838; 42.6% identity (61.4% similar) in 430 aa overlap (20-397:14-434)

               10        20        30        40        50        60
pF1KB8 MERIPSAQPPPACLPKAPGLEHGDLPGMYPAHMYQVYKSRRGIKRSEDSKETYKLPHRLI
                          ::: :. :.  . .:.  : .:..:: .:.:.:::::::::
CCDS87       MDEGIPHLQERQLLEHRDFIGLDYSSLYMC-KPKRSMKR-DDTKDTYKLPHRLI
                     10        20        30          40        50  

               70        80        90       100       110       120
pF1KB8 EKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALTNLIDQQQQKIIA
       :::::::::::::::::::::::::::::::::::::::::::.:::: : .::.:::::
CCDS87 EKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHLKALTALTEQQHQKIIA
             60        70        80        90       100       110  

              130        140       150       160         170       
pF1KB8 LQSGLQAGELSGRN-VETGQEMFCSGFQTCAREVLQYLAKHEN--TRDLKSSQLVTHLHR
       ::.:    : : .. ...  . : :::::::.::::::.. :.   :. .  ::..::: 
CCDS87 LQNG----ERSLKSPIQSDLDAFHSGFQTCAKEVLQYLSRFESWTPREPRCVQLINHLHA
                120       130       140       150       160        

       180          190          200       210        220       230
pF1KB8 VVSELL---QGGTSRKP---SDPAPKVMDFKEKPSSPAKGSE-GPGKNCVPVIQRTFAHS
       :....:   :  :.. :   .  ::..      :     :..  :   ::::::::  . 
CCDS87 VATQFLPTPQLLTQQVPLSKGTGAPSAAGSAAAPCLERAGQKLEPLAYCVPVIQRT--QP
      170       180       190       200       210       220        

               240       250                     260       270     
pF1KB8 SGEQSG-SDTDTDSGYGGESE------KGD--------LRSEQPCFKSDHGRRFTMGERI
       :.: .. .:::::::::::.:      ::         ...: :   :   .:. .  : 
CCDS87 SAELAAENDTDTDSGYGGEAEARPDREKGKGAGASRVTIKQEPPGEDSPAPKRMKLDSRG
        230       240       250       260       270       280      

                   280       290       300             310         
pF1KB8 G----------AIKQESEEPPTKKNRMQLSDDEGHFTSSDLIS------SPFLGPHPHQP
       :          :    .   :       :   .. . :: :..      .::  :     
CCDS87 GGSGGGPGGGAAAAAAALLGPDPAAAAALLRPDAALLSS-LVAFGGGGGAPFPQPAAAAA
        290       300       310       320        330       340     

     320        330             340           350       360        
pF1KB8 PFCLPF-YLIPPSATAYL-PML-----EKCWYPTSV----PVLYPGLNASAAALSSFMNP
       :::::: .: : .:.::. :.:     ::  ::...    :.::::. : ::: ..    
CCDS87 PFCLPFCFLSPSAAAAYVQPFLDKSGLEKYLYPAAAAAPFPLLYPGIPAPAAAAAAAAAA
         350       360       370       380       390       400     

      370       380       390       400       410                  
pF1KB8 DKISAPLLMPQRLPSPLPAHPSVDSSVLLQALKPIPPLNLETKD                
          .: .   . . :: : . .. ...::                               
CCDS87 AAAAAAFPCLSSVLSPPPEKAGAAAATLLPHEVAPLGAPHPQHPHGRTHLPFAGPREPGN
         410       420       430       440       450       460     




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:23:06 2016 done: Fri Nov  4 11:23:06 2016
 Total Scan time:  2.810 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]