FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8293, 302 aa 1>>>pF1KB8293 302 - 302 aa - 302 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7893+/-0.00091; mu= 4.9265+/- 0.055 mean_var=155.6332+/-31.342, 0's: 0 Z-trim(111.4): 7 B-trim: 176 in 1/50 Lambda= 0.102807 statistics sampled from 12311 (12313) to 12311 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.378), width: 16 Scan time: 2.370 The best scores are: opt bits E(32554) CCDS3696.1 AP1AR gene_id:55435|Hs108|chr4 ( 302) 1994 307.1 1e-83 CCDS47125.1 AP1AR gene_id:55435|Hs108|chr4 ( 269) 1174 185.5 3.9e-47 >>CCDS3696.1 AP1AR gene_id:55435|Hs108|chr4 (302 aa) initn: 1994 init1: 1994 opt: 1994 Z-score: 1616.3 bits: 307.1 E(32554): 1e-83 Smith-Waterman score: 1994; 99.7% identity (100.0% similar) in 302 aa overlap (1-302:1-302) 10 20 30 40 50 60 pF1KB8 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 HRPLTEEEIVDLRERHYDSIAEKQKDLDEKIQKELALQEEKLRLEEEALYAAQREAARAA ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: CCDS36 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKELALQEEKLRLEEEALYAAQREAARAA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ 250 260 270 280 290 300 pF1KB8 TR :: CCDS36 TR >>CCDS47125.1 AP1AR gene_id:55435|Hs108|chr4 (269 aa) initn: 1163 init1: 1163 opt: 1174 Z-score: 959.8 bits: 185.5 E(32554): 3.9e-47 Smith-Waterman score: 1726; 88.7% identity (89.1% similar) in 302 aa overlap (1-302:1-269) 10 20 30 40 50 60 pF1KB8 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 HRPLTEEEIVDLRERHYDSIAEKQKDLDEKIQKELALQEEKLRLEEEALYAAQREAARAA ::::::::::::::::::::::::::::.::::: CCDS47 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKE-------------------------- 70 80 90 130 140 150 160 170 180 pF1KB8 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 -------QERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL 100 110 120 130 140 190 200 210 220 230 240 pF1KB8 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS 150 160 170 180 190 200 250 260 270 280 290 300 pF1KB8 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ 210 220 230 240 250 260 pF1KB8 TR :: CCDS47 TR 302 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:27:38 2016 done: Fri Nov 4 11:27:38 2016 Total Scan time: 2.370 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]