FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8300, 463 aa 1>>>pF1KB8300 463 - 463 aa - 463 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2410+/-0.00121; mu= 12.9476+/- 0.072 mean_var=75.0978+/-14.856, 0's: 0 Z-trim(101.3): 47 B-trim: 0 in 0/50 Lambda= 0.148000 statistics sampled from 6452 (6472) to 6452 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.549), E-opt: 0.2 (0.199), width: 16 Scan time: 1.940 The best scores are: opt bits E(32554) CCDS42588.1 RUVBL2 gene_id:10856|Hs108|chr19 ( 463) 2907 630.6 1e-180 CCDS3047.1 RUVBL1 gene_id:8607|Hs108|chr3 ( 456) 747 169.4 6.8e-42 CCDS82833.1 RUVBL1 gene_id:8607|Hs108|chr3 ( 315) 545 126.3 4.7e-29 >>CCDS42588.1 RUVBL2 gene_id:10856|Hs108|chr19 (463 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 3358.0 bits: 630.6 E(32554): 1e-180 Smith-Waterman score: 2907; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463) 10 20 30 40 50 60 pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE 370 380 390 400 410 420 430 440 450 460 pF1KB8 VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS ::::::::::::::::::::::::::::::::::::::::::: CCDS42 VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS 430 440 450 460 >>CCDS3047.1 RUVBL1 gene_id:8607|Hs108|chr3 (456 aa) initn: 1229 init1: 483 opt: 747 Z-score: 865.6 bits: 169.4 E(32554): 6.8e-42 Smith-Waterman score: 1267; 43.0% identity (73.7% similar) in 456 aa overlap (9-451:2-455) 10 20 30 40 50 60 pF1KB8 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL :. :....:. .::..:::..:::::.. .::..:.::: ::.: ::.. CCDS30 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT :.:. :.::::::.:: :::::::.:...:: :: .:: ..:::..: :..:::.: CCDS30 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM 60 70 80 90 100 110 130 140 150 160 170 pF1KB8 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLG . :::.::.:::: :. ::::.:. . . : : :. .... :::.. : CCDS30 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB8 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR ...::: :..:.::::: :. .: ... :: : : ..: . . .: : :...:. CCDS30 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK 180 190 200 210 220 230 240 250 260 270 280 pF1KB8 KEVVHTVSLHEIDVINSRTQGFLALFS--GDT-----GEIKSEVREQINAKVAEWREEGK ::... :.::..:: :.: :: ..: :. :: ...: .:: : .. ..: CCDS30 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI 240 250 260 270 280 290 290 300 310 320 330 340 pF1KB8 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP ::..:::::.::::::::: :..:.:::::..::..:.:.::: :::: . :::::: CCDS30 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIP 300 310 320 330 340 350 350 360 370 380 390 400 pF1KB8 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT .:::::..:. : :. .. :::..:: . : ...::.: . : .:: .:.:::..::.: CCDS30 LDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLT 360 370 380 390 400 410 410 420 430 440 450 460 pF1KB8 AASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS :.:. . .. . .... :: : . :.. . . :: .. CCDS30 PANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK 420 430 440 450 >>CCDS82833.1 RUVBL1 gene_id:8607|Hs108|chr3 (315 aa) initn: 886 init1: 310 opt: 545 Z-score: 635.1 bits: 126.3 E(32554): 4.7e-29 Smith-Waterman score: 895; 45.6% identity (73.4% similar) in 316 aa overlap (68-370:1-314) 40 50 60 70 80 90 pF1KB8 EPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD .::::::.:: :::::::.:...:: :: CCDS82 MAGRAVLLAGPPGTGKTALALAIAQELGSK 10 20 30 100 110 120 130 140 150 pF1KB8 TPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGT .:: ..:::..: :..:::.: . :::.::.:::: :. ::::.:. . . : : CCDS82 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY 40 50 60 70 80 90 160 170 180 190 200 210 pF1KB8 GSKVGKLT--LKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRA :. .... :::.. : ...::: :..:.::::: :. .: ... :: : : CCDS82 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA 100 110 120 130 140 150 220 230 240 250 260 pF1KB8 RDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFS--GDT----- ..: . . .: : :...:.::... :.::..:: :.: :: ..: :. CCDS82 TEFDLEAEE--YVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKK 160 170 180 190 200 270 280 290 300 310 320 pF1KB8 GEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLI :: ...: .:: : .. ..: ::..:::::.::::::::: :..:.:::::..::..: CCDS82 TEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVI 210 220 230 240 250 260 330 340 350 360 370 380 pF1KB8 MATNRGITRIRGT-SYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSE .:.::: :::: . ::::::.:::::..:. : :. .. ::. CCDS82 FASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQVP 270 280 290 300 310 390 400 410 420 430 440 pF1KB8 DAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMK 463 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:30:13 2016 done: Fri Nov 4 11:30:13 2016 Total Scan time: 1.940 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]