FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8307, 118 aa
  1>>>pF1KB8307 118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0357+/-0.000818; mu= 5.5688+/- 0.048
 mean_var=102.0122+/-21.209, 0's: 0 Z-trim(109.4): 200  B-trim: 0 in 0/51
 Lambda= 0.126984
 statistics sampled from 10570 (10841) to 10570 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.333), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS5842.1 MTPN gene_id:136319|Hs108|chr7          ( 118)  787 154.1 1.9e-38


>>CCDS5842.1 MTPN gene_id:136319|Hs108|chr7               (118 aa)
 initn: 787 init1: 787 opt: 787  Z-score: 803.7  bits: 154.1 E(32554): 1.9e-38
Smith-Waterman score: 787; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB8 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB8 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ
               70        80        90       100       110        




118 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:08:14 2016 done: Sat Nov  5 02:08:14 2016
 Total Scan time:  1.500 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]