FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8311, 117 aa 1>>>pF1KB8311 117 - 117 aa - 117 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7557+/-0.000318; mu= 12.8108+/- 0.020 mean_var=53.0782+/-10.617, 0's: 0 Z-trim(113.6): 17 B-trim: 0 in 0/57 Lambda= 0.176042 statistics sampled from 23010 (23027) to 23010 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.27), width: 16 Scan time: 3.360 The best scores are: opt bits E(85289) NP_009216 (OMIM: 607452) gamma-aminobutyric acid r ( 117) 776 204.5 3.1e-53 NP_113600 (OMIM: 607420) gamma-aminobutyric acid r ( 117) 479 129.1 1.6e-30 NP_009209 (OMIM: 605125) gamma-aminobutyric acid r ( 117) 462 124.8 3.2e-29 XP_005253401 (OMIM: 607420) PREDICTED: gamma-amino ( 146) 405 110.4 8.7e-25 NP_115903 (OMIM: 601242) microtubule-associated pr ( 121) 332 91.8 2.8e-19 XP_011527387 (OMIM: 601242) PREDICTED: microtubule ( 182) 332 91.9 4e-19 XP_011527385 (OMIM: 601242) PREDICTED: microtubule ( 223) 332 91.9 4.7e-19 XP_011527386 (OMIM: 601242) PREDICTED: microtubule ( 223) 332 91.9 4.7e-19 NP_852610 (OMIM: 601242) microtubule-associated pr ( 125) 314 87.2 6.9e-18 NP_073729 (OMIM: 609604) microtubule-associated pr ( 125) 307 85.4 2.4e-17 NP_001004343 (OMIM: 609605) microtubule-associated ( 147) 306 85.2 3.2e-17 XP_005273196 (OMIM: 609605) PREDICTED: microtubule ( 147) 306 85.2 3.2e-17 >>NP_009216 (OMIM: 607452) gamma-aminobutyric acid recep (117 aa) initn: 776 init1: 776 opt: 776 Z-score: 1076.7 bits: 204.5 E(85289): 3.1e-53 Smith-Waterman score: 776; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 70 80 90 100 110 >>NP_113600 (OMIM: 607420) gamma-aminobutyric acid recep (117 aa) initn: 514 init1: 479 opt: 479 Z-score: 669.0 bits: 129.1 E(85289): 1.6e-30 Smith-Waterman score: 479; 61.2% identity (86.2% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF ::...:::: .:.: :. ::: ::::::::::::. ... :.::::::::::.::.:: NP_113 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF ...:::::.: : :.:.::..:.: .: ::::::: ...:: ::::::: :...: NP_113 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 70 80 90 100 110 >>NP_009209 (OMIM: 605125) gamma-aminobutyric acid recep (117 aa) initn: 483 init1: 462 opt: 462 Z-score: 645.7 bits: 124.8 E(85289): 3.2e-29 Smith-Waterman score: 462; 57.3% identity (88.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF ::...::.: .:.: :. ::: ::::::::::::. ..: :.::.:::::::.::.:: NP_009 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF ...:::::.: .: :.:.::....: .: ::::::.....:: :::.::: :...:. NP_009 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 70 80 90 100 110 >>XP_005253401 (OMIM: 607420) PREDICTED: gamma-aminobuty (146 aa) initn: 405 init1: 405 opt: 405 Z-score: 566.0 bits: 110.4 E(85289): 8.7e-25 Smith-Waterman score: 405; 62.5% identity (86.5% similar) in 96 aa overlap (1-96:1-96) 10 20 30 40 50 60 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF ::...:::: .:.: :. ::: ::::::::::::. ... :.::::::::::.::.:: XP_005 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF ...:::::.: : :.:.::..:.: .: ::::::: XP_005 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEVMVLVAQYWMPSSAVWHPLALVLD 70 80 90 100 110 120 XP_005 ALITHLRSGAEGVIYPDPLTYGSVRL 130 140 >>NP_115903 (OMIM: 601242) microtubule-associated protei (121 aa) initn: 328 init1: 127 opt: 332 Z-score: 467.0 bits: 91.8 E(85289): 2.8e-19 Smith-Waterman score: 332; 41.7% identity (80.9% similar) in 115 aa overlap (5-117:7-121) 10 20 30 40 50 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPSDITV ::. .:. :: : .:: ..:...:::.:. .: .:. .:: :.:::. ... NP_115 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 AQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG .... :::.:.:: .:.::.:.. .. . : ....::.:::::::::..:....::: NP_115 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 70 80 90 100 110 120 pF1KB8 F : NP_115 F >>XP_011527387 (OMIM: 601242) PREDICTED: microtubule-ass (182 aa) initn: 328 init1: 127 opt: 332 Z-score: 464.4 bits: 91.9 E(85289): 4e-19 Smith-Waterman score: 332; 41.7% identity (80.9% similar) in 115 aa overlap (5-117:68-182) 10 20 30 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVE ::. .:. :: : .:: ..:...:::.: XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE 40 50 60 70 80 90 40 50 60 70 80 90 pF1KB8 KVSG-SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMG . .: .:. .:: :.:::. ....... :::.:.:: .:.::.:.. .. . : .. XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA 100 110 120 130 140 150 100 110 pF1KB8 QLYEKEKDEDGFLYVAYSGENTFGF ..::.:::::::::..:....:::: XP_011 DIYEQEKDEDGFLYMVYASQETFGF 160 170 180 >>XP_011527385 (OMIM: 601242) PREDICTED: microtubule-ass (223 aa) initn: 328 init1: 127 opt: 332 Z-score: 463.0 bits: 91.9 E(85289): 4.7e-19 Smith-Waterman score: 332; 41.7% identity (80.9% similar) in 115 aa overlap (5-117:109-223) 10 20 30 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVE ::. .:. :: : .:: ..:...:::.: XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE 80 90 100 110 120 130 40 50 60 70 80 90 pF1KB8 KVSG-SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMG . .: .:. .:: :.:::. ....... :::.:.:: .:.::.:.. .. . : .. XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA 140 150 160 170 180 190 100 110 pF1KB8 QLYEKEKDEDGFLYVAYSGENTFGF ..::.:::::::::..:....:::: XP_011 DIYEQEKDEDGFLYMVYASQETFGF 200 210 220 >>XP_011527386 (OMIM: 601242) PREDICTED: microtubule-ass (223 aa) initn: 328 init1: 127 opt: 332 Z-score: 463.0 bits: 91.9 E(85289): 4.7e-19 Smith-Waterman score: 332; 41.7% identity (80.9% similar) in 115 aa overlap (5-117:109-223) 10 20 30 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVE ::. .:. :: : .:: ..:...:::.: XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE 80 90 100 110 120 130 40 50 60 70 80 90 pF1KB8 KVSG-SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMG . .: .:. .:: :.:::. ....... :::.:.:: .:.::.:.. .. . : .. XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA 140 150 160 170 180 190 100 110 pF1KB8 QLYEKEKDEDGFLYVAYSGENTFGF ..::.:::::::::..:....:::: XP_011 DIYEQEKDEDGFLYMVYASQETFGF 200 210 220 >>NP_852610 (OMIM: 601242) microtubule-associated protei (125 aa) initn: 310 init1: 127 opt: 314 Z-score: 442.1 bits: 87.2 E(85289): 6.9e-18 Smith-Waterman score: 314; 42.5% identity (82.1% similar) in 106 aa overlap (14-117:20-125) 10 20 30 40 50 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPS :: : .:: ..:...:::.:. .: .:. .:: :.:::. NP_852 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 DITVAQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGE ....... :::.:.:: .:.::.:.. .. . : ....::.:::::::::..:... NP_852 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ 70 80 90 100 110 120 pF1KB8 NTFGF .:::: NP_852 ETFGF >>NP_073729 (OMIM: 609604) microtubule-associated protei (125 aa) initn: 303 init1: 118 opt: 307 Z-score: 432.5 bits: 85.4 E(85289): 2.4e-17 Smith-Waterman score: 307; 39.5% identity (81.6% similar) in 114 aa overlap (5-116:7-120) 10 20 30 40 50 pF1KB8 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSG-SQIVDIDKRKYLVPSDITV ::. ...:.: . :: ..: ..:::.:. .: .:. .:: :.:::. ... NP_073 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 AQFMWIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG .... :::.:.:: ...:.::.:. ... . : ....::.:::::::::..:....::: NP_073 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 70 80 90 100 110 120 pF1KB8 F NP_073 MKLSV 117 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:37:43 2016 done: Fri Nov 4 11:37:43 2016 Total Scan time: 3.360 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]