FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8313, 368 aa
  1>>>pF1KB8313 368 - 368 aa - 368 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8485+/-0.000735; mu= 14.3504+/- 0.044
 mean_var=80.8715+/-15.892, 0's: 0 Z-trim(110.1): 13  B-trim: 15 in 1/52
 Lambda= 0.142619
 statistics sampled from 11375 (11382) to 11375 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.35), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS35438.1 HAUS7 gene_id:55559|Hs108|chrX         ( 368) 2490 521.7 4.1e-148


>>CCDS35438.1 HAUS7 gene_id:55559|Hs108|chrX              (368 aa)
 initn: 2490 init1: 2490 opt: 2490  Z-score: 2772.7  bits: 521.7 E(32554): 4.1e-148
Smith-Waterman score: 2490; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB8 MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LHPCGPIIQATHQNLTSYSQLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LHPCGPIIQATHQNLTSYSQLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLAT
              310       320       330       340       350       360

               
pF1KB8 KMNELMEK
       ::::::::
CCDS35 KMNELMEK
               




368 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:38:53 2016 done: Fri Nov  4 11:38:54 2016
 Total Scan time:  2.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]