FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8313, 368 aa
  1>>>pF1KB8313 368 - 368 aa - 368 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7807+/-0.000323; mu= 14.7066+/- 0.020
 mean_var=83.6248+/-16.913, 0's: 0 Z-trim(116.8): 3  B-trim: 1290 in 2/56
 Lambda= 0.140251
 statistics sampled from 28308 (28311) to 28308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.332), width:  16
 Scan time:  6.370

The best scores are:                                      opt bits E(85289)
NP_059988 (OMIM: 300540) HAUS augmin-like complex  ( 368) 2490 513.4 3.2e-145


>>NP_059988 (OMIM: 300540) HAUS augmin-like complex subu  (368 aa)
 initn: 2490 init1: 2490 opt: 2490  Z-score: 2728.1  bits: 513.4 E(85289): 3.2e-145
Smith-Waterman score: 2490; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB8 MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LHPCGPIIQATHQNLTSYSQLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 LHPCGPIIQATHQNLTSYSQLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLAT
              310       320       330       340       350       360

               
pF1KB8 KMNELMEK
       ::::::::
NP_059 KMNELMEK
               




368 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:38:54 2016 done: Fri Nov  4 11:38:55 2016
 Total Scan time:  6.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]