Result of FASTA (ccds) for
pF1KB8320
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8320, 129 aa
1>>>pF1KB8320 129 - 129 aa - 129 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1769+/-0.000798; mu= 11.4888+/- 0.048
mean_var=68.4808+/-13.914, 0's: 0 Z-trim(108.2): 136 B-trim: 328 in 1/47
Lambda= 0.154985
statistics sampled from 9869 (10029) to 9869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.308), width: 16
Scan time: 1.010
The best scores are: opt bits E(32554)
CCDS46305.1 RAB1A gene_id:5861|Hs108|chr2 ( 129) 830 193.9 2.2e-50
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 426 103.7 5.1e-23
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 390 95.7 1.3e-20
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 312 78.3 2.4e-15
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 308 77.4 4.5e-15
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 298 75.1 2.1e-14
CCDS53836.1 RAB35 gene_id:11021|Hs108|chr12 ( 152) 295 74.4 2.6e-14
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 295 74.4 3.3e-14
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 288 72.9 9.7e-14
CCDS9768.1 RAB15 gene_id:376267|Hs108|chr14 ( 208) 275 70.0 7.5e-13
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 275 70.0 7.6e-13
>>CCDS46305.1 RAB1A gene_id:5861|Hs108|chr2 (129 aa)
initn: 830 init1: 830 opt: 830 Z-score: 1017.9 bits: 193.9 E(32554): 2.2e-50
Smith-Waterman score: 830; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
70 80 90 100 110 120
pF1KB8 VKQSGGGCC
:::::::::
CCDS46 VKQSGGGCC
>>CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 (205 aa)
initn: 816 init1: 423 opt: 426 Z-score: 526.8 bits: 103.7 E(32554): 5.1e-23
Smith-Waterman score: 426; 71.0% identity (84.0% similar) in 100 aa overlap (30-129:111-205)
10 20 30 40 50
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT
:.:... .. ... :. . . .: :
CCDS46 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN-KCDLTTKKV-VDYTT
90 100 110 120 130
60 70 80 90 100 110
pF1KB8 IKLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST
: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AK---EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST
140 150 160 170 180 190
120
pF1KB8 PVKQSGGGCC
::::::::::
CCDS46 PVKQSGGGCC
200
>--
initn: 416 init1: 407 opt: 407 Z-score: 503.8 bits: 99.5 E(32554): 9.6e-22
Smith-Waterman score: 407; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
::::
CCDS46 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL
70 80 90 100 110 120
>>CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 (201 aa)
initn: 641 init1: 390 opt: 390 Z-score: 483.4 bits: 95.7 E(32554): 1.3e-20
Smith-Waterman score: 390; 100.0% identity (100.0% similar) in 61 aa overlap (4-64:1-61)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
::::
CCDS31 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKL
60 70 80 90 100 110
>--
initn: 275 init1: 265 opt: 367 Z-score: 455.6 bits: 90.5 E(32554): 4.7e-19
Smith-Waterman score: 367; 61.0% identity (83.0% similar) in 100 aa overlap (30-129:108-201)
10 20 30 40 50
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT
:.:... .. ... . :. . . .:. :
CCDS31 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS-DLTTKKV-VDNTT
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB8 IKLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST
: :::::::::::::::::::::::.::::::::::::::::..:: :. :.::.::
CCDS31 AK---EFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG-ERPNLKIDST
140 150 160 170 180 190
120
pF1KB8 PVKQSGGGCC
::: .:::::
CCDS31 PVKPAGGGCC
200
>>CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 (207 aa)
initn: 402 init1: 312 opt: 312 Z-score: 389.0 bits: 78.3 E(32554): 2.4e-15
Smith-Waterman score: 312; 75.4% identity (91.8% similar) in 61 aa overlap (4-64:1-61)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
: :::::::::::::::::.:::.::..:... ..:::::.:::::::::::: :
CCDS10 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
::::
CCDS10 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERM
60 70 80 90 100 110
>>CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 (207 aa)
initn: 423 init1: 308 opt: 308 Z-score: 384.1 bits: 77.4 E(32554): 4.5e-15
Smith-Waterman score: 308; 73.8% identity (91.8% similar) in 61 aa overlap (4-64:1-61)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
: :::::::::::::::::.:.:.::..:... ..:::::.:::::::::::: :
CCDS12 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
::::
CCDS12 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM
60 70 80 90 100 110
>>CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 (203 aa)
initn: 365 init1: 294 opt: 298 Z-score: 372.2 bits: 75.1 E(32554): 2.1e-14
Smith-Waterman score: 298; 67.2% identity (93.4% similar) in 61 aa overlap (4-64:1-61)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
: ::.::::::::::::::.::..:::.:.....::::::.::::::....:: :
CCDS10 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
:::.
CCDS10 KLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERL
60 70 80 90 100 110
>>CCDS53836.1 RAB35 gene_id:11021|Hs108|chr12 (152 aa)
initn: 325 init1: 295 opt: 295 Z-score: 370.4 bits: 74.4 E(32554): 2.6e-14
Smith-Waterman score: 295; 72.1% identity (91.8% similar) in 61 aa overlap (4-64:1-61)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
: .::.:::::.::::::::: :::::::.:.. :::.::::::::::.:..:. .
CCDS53 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
::::
CCDS53 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL
60 70 80 90 100 110
>>CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 (201 aa)
initn: 375 init1: 295 opt: 295 Z-score: 368.6 bits: 74.4 E(32554): 3.3e-14
Smith-Waterman score: 295; 72.1% identity (91.8% similar) in 61 aa overlap (4-64:1-61)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
: .::.:::::.::::::::: :::::::.:.. :::.::::::::::.:..:. .
CCDS41 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
::::
CCDS41 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL
60 70 80 90 100 110
>>CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 (200 aa)
initn: 399 init1: 288 opt: 288 Z-score: 360.2 bits: 72.9 E(32554): 9.7e-14
Smith-Waterman score: 288; 71.9% identity (94.7% similar) in 57 aa overlap (8-64:6-62)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
:: ::::::::::::::.:.:.::.::... ..:::::.::::.:.::.:: :
CCDS17 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
::::
CCDS17 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERM
60 70 80 90 100 110
>>CCDS9768.1 RAB15 gene_id:376267|Hs108|chr14 (208 aa)
initn: 271 init1: 271 opt: 275 Z-score: 344.2 bits: 70.0 E(32554): 7.5e-13
Smith-Waterman score: 275; 57.1% identity (79.2% similar) in 77 aa overlap (4-80:1-75)
10 20 30 40 50 60
pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
: .:: ::.:::::::::::.::: ::.:. . :.:::::::::..:::.:: :
CCDS97 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDG--I
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP
:..:.. :. : .: .:
CCDS97 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEVGDATSL
60 70 80 90 100 110
129 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:43:18 2016 done: Fri Nov 4 11:43:18 2016
Total Scan time: 1.010 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]