FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8328, 173 aa
  1>>>pF1KB8328 173 - 173 aa - 173 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8383+/-0.000798; mu= 14.4888+/- 0.048
 mean_var=54.2701+/-10.766, 0's: 0 Z-trim(106.0): 8  B-trim: 0 in 0/48
 Lambda= 0.174098
 statistics sampled from 8731 (8732) to 8731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.268), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS14731.1 SSR4 gene_id:6748|Hs108|chrX           ( 173) 1119 288.8 1.2e-78


>>CCDS14731.1 SSR4 gene_id:6748|Hs108|chrX                (173 aa)
 initn: 1119 init1: 1119 opt: 1119  Z-score: 1525.7  bits: 288.8 E(32554): 1.2e-78
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KB8 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
              130       140       150       160       170   




173 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:47:57 2016 done: Fri Nov  4 11:47:58 2016
 Total Scan time:  1.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]