Result of FASTA (omim) for
pF1KB8328
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8328, 173 aa
1>>>pF1KB8328 173 - 173 aa - 173 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9402+/-0.00036; mu= 13.6201+/- 0.022
mean_var=50.8083+/-10.109, 0's: 0 Z-trim(112.0): 17 B-trim: 0 in 0/50
Lambda= 0.179931
statistics sampled from 20737 (20744) to 20737 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.243), width: 16
Scan time: 3.430
The best scores are: opt bits E(85289)
XP_011529489 (OMIM: 300090,300934) PREDICTED: tran ( 173) 1119 298.1 4.8e-81
XP_011529488 (OMIM: 300090,300934) PREDICTED: tran ( 173) 1119 298.1 4.8e-81
NP_006271 (OMIM: 300090,300934) translocon-associa ( 173) 1119 298.1 4.8e-81
NP_001191456 (OMIM: 300090,300934) translocon-asso ( 181) 1119 298.1 5e-81
NP_001191455 (OMIM: 300090,300934) translocon-asso ( 184) 1119 298.1 5e-81
XP_016885246 (OMIM: 300090,300934) PREDICTED: tran ( 110) 734 198.1 3.9e-51
XP_016885245 (OMIM: 300090,300934) PREDICTED: tran ( 110) 734 198.1 3.9e-51
>>XP_011529489 (OMIM: 300090,300934) PREDICTED: transloc (173 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 1576.1 bits: 298.1 E(85289): 4.8e-81
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
130 140 150 160 170
>>XP_011529488 (OMIM: 300090,300934) PREDICTED: transloc (173 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 1576.1 bits: 298.1 E(85289): 4.8e-81
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
130 140 150 160 170
>>NP_006271 (OMIM: 300090,300934) translocon-associated (173 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 1576.1 bits: 298.1 E(85289): 4.8e-81
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
130 140 150 160 170
>>NP_001191456 (OMIM: 300090,300934) translocon-associat (181 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 1575.8 bits: 298.1 E(85289): 5e-81
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:9-181)
10 20 30 40 50
pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVE
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTESREEAMAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 ISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 SLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQ
130 140 150 160 170 180
pF1KB8 A
:
NP_001 A
>>NP_001191455 (OMIM: 300090,300934) translocon-associat (184 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 1575.6 bits: 298.1 E(85289): 5e-81
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:12-184)
10 20 30 40
pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVF
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAQPFGREEAMAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 IVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 ESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKS
130 140 150 160 170 180
170
pF1KB8 HIQA
::::
NP_001 HIQA
>>XP_016885246 (OMIM: 300090,300934) PREDICTED: transloc (110 aa)
initn: 734 init1: 734 opt: 734 Z-score: 1039.1 bits: 198.1 E(85289): 3.9e-51
Smith-Waterman score: 734; 100.0% identity (100.0% similar) in 110 aa overlap (64-173:1-110)
40 50 60 70 80 90
pF1KB8 SYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLD
::::::::::::::::::::::::::::::
XP_016 MALYADVGGKQFPVTRGQDVGRYQVSWSLD
10 20 30
100 110 120 130 140 150
pF1KB8 HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLA
40 50 60 70 80 90
160 170
pF1KB8 AAIGLVIYYLAFSAKSHIQA
::::::::::::::::::::
XP_016 AAIGLVIYYLAFSAKSHIQA
100 110
>>XP_016885245 (OMIM: 300090,300934) PREDICTED: transloc (110 aa)
initn: 734 init1: 734 opt: 734 Z-score: 1039.1 bits: 198.1 E(85289): 3.9e-51
Smith-Waterman score: 734; 100.0% identity (100.0% similar) in 110 aa overlap (64-173:1-110)
40 50 60 70 80 90
pF1KB8 SYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLD
::::::::::::::::::::::::::::::
XP_016 MALYADVGGKQFPVTRGQDVGRYQVSWSLD
10 20 30
100 110 120 130 140 150
pF1KB8 HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLA
40 50 60 70 80 90
160 170
pF1KB8 AAIGLVIYYLAFSAKSHIQA
::::::::::::::::::::
XP_016 AAIGLVIYYLAFSAKSHIQA
100 110
173 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:47:58 2016 done: Fri Nov 4 11:47:59 2016
Total Scan time: 3.430 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]