FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8328, 173 aa 1>>>pF1KB8328 173 - 173 aa - 173 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9402+/-0.00036; mu= 13.6201+/- 0.022 mean_var=50.8083+/-10.109, 0's: 0 Z-trim(112.0): 17 B-trim: 0 in 0/50 Lambda= 0.179931 statistics sampled from 20737 (20744) to 20737 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.243), width: 16 Scan time: 3.430 The best scores are: opt bits E(85289) XP_011529489 (OMIM: 300090,300934) PREDICTED: tran ( 173) 1119 298.1 4.8e-81 XP_011529488 (OMIM: 300090,300934) PREDICTED: tran ( 173) 1119 298.1 4.8e-81 NP_006271 (OMIM: 300090,300934) translocon-associa ( 173) 1119 298.1 4.8e-81 NP_001191456 (OMIM: 300090,300934) translocon-asso ( 181) 1119 298.1 5e-81 NP_001191455 (OMIM: 300090,300934) translocon-asso ( 184) 1119 298.1 5e-81 XP_016885246 (OMIM: 300090,300934) PREDICTED: tran ( 110) 734 198.1 3.9e-51 XP_016885245 (OMIM: 300090,300934) PREDICTED: tran ( 110) 734 198.1 3.9e-51 >>XP_011529489 (OMIM: 300090,300934) PREDICTED: transloc (173 aa) initn: 1119 init1: 1119 opt: 1119 Z-score: 1576.1 bits: 298.1 E(85289): 4.8e-81 Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 130 140 150 160 170 >>XP_011529488 (OMIM: 300090,300934) PREDICTED: transloc (173 aa) initn: 1119 init1: 1119 opt: 1119 Z-score: 1576.1 bits: 298.1 E(85289): 4.8e-81 Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 130 140 150 160 170 >>NP_006271 (OMIM: 300090,300934) translocon-associated (173 aa) initn: 1119 init1: 1119 opt: 1119 Z-score: 1576.1 bits: 298.1 E(85289): 4.8e-81 Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 130 140 150 160 170 >>NP_001191456 (OMIM: 300090,300934) translocon-associat (181 aa) initn: 1119 init1: 1119 opt: 1119 Z-score: 1575.8 bits: 298.1 E(85289): 5e-81 Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:9-181) 10 20 30 40 50 pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVE :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTESREEAMAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 ISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESY 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 SLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQ 130 140 150 160 170 180 pF1KB8 A : NP_001 A >>NP_001191455 (OMIM: 300090,300934) translocon-associat (184 aa) initn: 1119 init1: 1119 opt: 1119 Z-score: 1575.6 bits: 298.1 E(85289): 5e-81 Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:12-184) 10 20 30 40 pF1KB8 MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVF ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPAQPFGREEAMAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVF 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB8 IVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB8 ESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKS 130 140 150 160 170 180 170 pF1KB8 HIQA :::: NP_001 HIQA >>XP_016885246 (OMIM: 300090,300934) PREDICTED: transloc (110 aa) initn: 734 init1: 734 opt: 734 Z-score: 1039.1 bits: 198.1 E(85289): 3.9e-51 Smith-Waterman score: 734; 100.0% identity (100.0% similar) in 110 aa overlap (64-173:1-110) 40 50 60 70 80 90 pF1KB8 SYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLD :::::::::::::::::::::::::::::: XP_016 MALYADVGGKQFPVTRGQDVGRYQVSWSLD 10 20 30 100 110 120 130 140 150 pF1KB8 HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLA 40 50 60 70 80 90 160 170 pF1KB8 AAIGLVIYYLAFSAKSHIQA :::::::::::::::::::: XP_016 AAIGLVIYYLAFSAKSHIQA 100 110 >>XP_016885245 (OMIM: 300090,300934) PREDICTED: transloc (110 aa) initn: 734 init1: 734 opt: 734 Z-score: 1039.1 bits: 198.1 E(85289): 3.9e-51 Smith-Waterman score: 734; 100.0% identity (100.0% similar) in 110 aa overlap (64-173:1-110) 40 50 60 70 80 90 pF1KB8 SYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRYQVSWSLD :::::::::::::::::::::::::::::: XP_016 MALYADVGGKQFPVTRGQDVGRYQVSWSLD 10 20 30 100 110 120 130 140 150 pF1KB8 HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLA 40 50 60 70 80 90 160 170 pF1KB8 AAIGLVIYYLAFSAKSHIQA :::::::::::::::::::: XP_016 AAIGLVIYYLAFSAKSHIQA 100 110 173 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:47:58 2016 done: Fri Nov 4 11:47:59 2016 Total Scan time: 3.430 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]