FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8334, 188 aa 1>>>pF1KB8334 188 - 188 aa - 188 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8273+/-0.000758; mu= 8.0288+/- 0.046 mean_var=151.0948+/-31.197, 0's: 0 Z-trim(114.1): 26 B-trim: 0 in 0/54 Lambda= 0.104340 statistics sampled from 14629 (14653) to 14629 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.45), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX ( 188) 1291 204.8 2.5e-53 CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX ( 188) 1291 204.8 2.5e-53 CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX ( 188) 1161 185.3 1.9e-47 CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX ( 188) 1087 174.1 4.4e-44 CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX ( 188) 1087 174.1 4.4e-44 CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX ( 223) 1082 173.4 8.4e-44 CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX ( 223) 1082 173.4 8.4e-44 CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX ( 188) 1014 163.1 8.9e-41 CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX ( 188) 1014 163.1 8.9e-41 CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX ( 188) 986 158.9 1.7e-39 CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX ( 229) 953 154.0 6e-38 CCDS43935.1 SSX4B gene_id:548313|Hs108|chrX ( 153) 562 95.0 2.3e-20 CCDS43934.1 SSX4 gene_id:6759|Hs108|chrX ( 153) 562 95.0 2.3e-20 >>CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX (188 aa) initn: 1291 init1: 1291 opt: 1291 Z-score: 1070.9 bits: 204.8 E(32554): 2.5e-53 Smith-Waterman score: 1291; 99.5% identity (99.5% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS48 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: CCDS48 SDPEEDDE >>CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX (188 aa) initn: 1291 init1: 1291 opt: 1291 Z-score: 1070.9 bits: 204.8 E(32554): 2.5e-53 Smith-Waterman score: 1291; 99.5% identity (99.5% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: CCDS14 SDPEEDDE >>CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX (188 aa) initn: 1161 init1: 1161 opt: 1161 Z-score: 965.1 bits: 185.3 E(32554): 1.9e-47 Smith-Waterman score: 1161; 90.4% identity (94.7% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::.:::::::::::::::::::::::::::::::::::.:::: ::::::::::::: CCDS14 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::: :: :: :::. ::::::.::::::::::.:::::::::::: :::::::::::: CCDS14 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI : :.:::::::::::::.:::::::::::::. :::::::::::::: ::::::::::: CCDS14 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: CCDS14 SDPEEDDE >>CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX (188 aa) initn: 1087 init1: 1087 opt: 1087 Z-score: 904.9 bits: 174.1 E(32554): 4.4e-44 Smith-Waterman score: 1087; 83.5% identity (94.1% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::.::: ::.:::::.::::::::::::..:::::::::::.::::::::::::: CCDS14 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.:::::: CCDS14 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::. :::::::::.::.: : :: .::::... ::::::.::::::. ::::::::::: CCDS14 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::.:::: CCDS14 SDPQEDDE >>CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX (188 aa) initn: 1087 init1: 1087 opt: 1087 Z-score: 904.9 bits: 174.1 E(32554): 4.4e-44 Smith-Waterman score: 1087; 85.1% identity (92.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK ::::::::::: .::::::::::.::::::::::.::::::. ::: ::::::::::::: CCDS14 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::::::::: : : :.::::.::: :.::::::::::: ::: : :::::::::::: CCDS14 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::. :::::: :::::.:::::::.:::::.. ::::::.::::::: ::::::::::: CCDS14 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: CCDS14 SDPEEDDE >>CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX (223 aa) initn: 1137 init1: 1080 opt: 1082 Z-score: 899.9 bits: 173.4 E(32554): 8.4e-44 Smith-Waterman score: 1082; 94.0% identity (97.6% similar) in 167 aa overlap (1-167:1-167) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::::::::::::::::::::::::::::::::::: ..... .: CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN 130 140 150 160 170 180 pF1KB8 SDPEEDDE CCDS14 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW 190 200 210 220 >>CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX (223 aa) initn: 1137 init1: 1080 opt: 1082 Z-score: 899.9 bits: 173.4 E(32554): 8.4e-44 Smith-Waterman score: 1082; 94.0% identity (97.6% similar) in 167 aa overlap (1-167:1-167) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::::::::::::::::::::::::::::::::::: ..... .: CCDS65 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN 130 140 150 160 170 180 pF1KB8 SDPEEDDE CCDS65 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW 190 200 210 220 >>CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX (188 aa) initn: 1014 init1: 1014 opt: 1014 Z-score: 845.5 bits: 163.1 E(32554): 8.9e-41 Smith-Waterman score: 1014; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK ::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.::: CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : ::::::::::: CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI : .:::::::::::::.:::::.:.: :::.. ::::::.::::::: ::::::.:::: CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: CCDS35 SDPEEDDE >>CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX (188 aa) initn: 1014 init1: 1014 opt: 1014 Z-score: 845.5 bits: 163.1 E(32554): 8.9e-41 Smith-Waterman score: 1014; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK ::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.::: CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : ::::::::::: CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI : .:::::::::::::.:::::.:.: :::.. ::::::.::::::: ::::::.:::: CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: CCDS35 SDPEEDDE >>CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX (188 aa) initn: 986 init1: 986 opt: 986 Z-score: 822.8 bits: 158.9 E(32554): 1.7e-39 Smith-Waterman score: 986; 77.7% identity (88.3% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::.::.:: :. :: .::::::: ::::.::.::: :::: ::::::.:.:::: CCDS14 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::.:::::::::.: ::::::.::: :: :::.::::::::. : ::::::::::. CCDS14 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::. : ::::::::::.: :::: . ::::..:::::::.::::::: ::::::::::: CCDS14 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: CCDS14 SDPEEDDE 188 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:51:33 2016 done: Fri Nov 4 11:51:33 2016 Total Scan time: 2.110 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]