FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8334, 188 aa 1>>>pF1KB8334 188 - 188 aa - 188 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5045+/-0.000292; mu= 9.5071+/- 0.018 mean_var=134.3000+/-27.021, 0's: 0 Z-trim(121.3): 23 B-trim: 0 in 0/58 Lambda= 0.110672 statistics sampled from 37785 (37810) to 37785 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.443), width: 16 Scan time: 5.020 The best scores are: opt bits E(85289) NP_783629 (OMIM: 300192,300813) protein SSX2 isofo ( 188) 1291 216.3 2.3e-56 NP_066294 (OMIM: 300325) protein SSX3 [Homo sapien ( 188) 1161 195.5 4.2e-50 XP_016885247 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1087 183.7 1.5e-46 NP_775494 (OMIM: 300542) protein SSX7 [Homo sapien ( 188) 1087 183.7 1.5e-46 XP_011542251 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1087 183.7 1.5e-46 NP_783729 (OMIM: 300327) protein SSX5 isoform b [H ( 188) 1087 183.7 1.5e-46 NP_001265626 (OMIM: 300192,300813) protein SSX2 is ( 214) 1082 183.0 2.9e-46 NP_003138 (OMIM: 300192,300813) protein SSX2 isofo ( 223) 1082 183.0 2.9e-46 NP_005627 (OMIM: 300326) protein SSX4 isoform a [H ( 188) 1014 172.1 4.8e-43 XP_016885248 (OMIM: 300326) PREDICTED: protein SSX ( 188) 1014 172.1 4.8e-43 NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo ( 188) 986 167.6 1.1e-41 NP_001265620 (OMIM: 300813,312820) protein SSX1 [H ( 188) 986 167.6 1.1e-41 NP_066295 (OMIM: 300327) protein SSX5 isoform a [H ( 229) 953 162.4 4.8e-40 XP_011542187 (OMIM: 300325) PREDICTED: protein SSX ( 170) 947 161.3 7.5e-40 XP_016884919 (OMIM: 300542) PREDICTED: protein SSX ( 223) 886 151.7 7.8e-37 XP_016884920 (OMIM: 300542) PREDICTED: protein SSX ( 129) 614 108.0 6.2e-24 NP_783856 (OMIM: 300326) protein SSX4 isoform b [H ( 153) 562 99.8 2.2e-21 XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377) 223 46.0 8.3e-05 NP_001091643 (OMIM: 609759) probable histone-lysin ( 492) 223 46.2 0.0001 XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492) 223 46.2 0.0001 NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894) 221 46.1 0.00019 NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894) 221 46.1 0.00019 XP_011521133 (OMIM: 609759) PREDICTED: probable hi ( 172) 196 41.4 0.00094 >>NP_783629 (OMIM: 300192,300813) protein SSX2 isoform b (188 aa) initn: 1291 init1: 1291 opt: 1291 Z-score: 1132.8 bits: 216.3 E(85289): 2.3e-56 Smith-Waterman score: 1291; 99.5% identity (99.5% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_783 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_783 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_783 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: NP_783 SDPEEDDE >>NP_066294 (OMIM: 300325) protein SSX3 [Homo sapiens] (188 aa) initn: 1161 init1: 1161 opt: 1161 Z-score: 1020.6 bits: 195.5 E(85289): 4.2e-50 Smith-Waterman score: 1161; 90.4% identity (94.7% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::.:::::::::::::::::::::::::::::::::::.:::: ::::::::::::: NP_066 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::: :: :: :::. ::::::.::::::::::.:::::::::::: :::::::::::: NP_066 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI : :.:::::::::::::.:::::::::::::. :::::::::::::: ::::::::::: NP_066 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: NP_066 SDPEEDDE >>XP_016885247 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa) initn: 1087 init1: 1087 opt: 1087 Z-score: 956.7 bits: 183.7 E(85289): 1.5e-46 Smith-Waterman score: 1087; 83.5% identity (94.1% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::.::: ::.:::::.::::::::::::..:::::::::::.::::::::::::: XP_016 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.:::::: XP_016 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::. :::::::::.::.: : :: .::::... ::::::.::::::. ::::::::::: XP_016 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::.:::: XP_016 SDPQEDDE >>NP_775494 (OMIM: 300542) protein SSX7 [Homo sapiens] (188 aa) initn: 1087 init1: 1087 opt: 1087 Z-score: 956.7 bits: 183.7 E(85289): 1.5e-46 Smith-Waterman score: 1087; 85.1% identity (92.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK ::::::::::: .::::::::::.::::::::::.::::::. ::: ::::::::::::: NP_775 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::::::::: : : :.::::.::: :.::::::::::: ::: : :::::::::::: NP_775 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::. :::::: :::::.:::::::.:::::.. ::::::.::::::: ::::::::::: NP_775 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: NP_775 SDPEEDDE >>XP_011542251 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa) initn: 1087 init1: 1087 opt: 1087 Z-score: 956.7 bits: 183.7 E(85289): 1.5e-46 Smith-Waterman score: 1087; 83.5% identity (94.1% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::.::: ::.:::::.::::::::::::..:::::::::::.::::::::::::: XP_011 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.:::::: XP_011 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::. :::::::::.::.: : :: .::::... ::::::.::::::. ::::::::::: XP_011 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::.:::: XP_011 SDPQEDDE >>NP_783729 (OMIM: 300327) protein SSX5 isoform b [Homo (188 aa) initn: 1087 init1: 1087 opt: 1087 Z-score: 956.7 bits: 183.7 E(85289): 1.5e-46 Smith-Waterman score: 1087; 83.5% identity (94.1% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::.::: ::.:::::.::::::::::::..:::::::::::.::::::::::::: NP_783 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::::::::: :::. ::::::.:::::::::::.::::::::::: ::: :.:::::: NP_783 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::. :::::::::.::.: : :: .::::... ::::::.::::::. ::::::::::: NP_783 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::.:::: NP_783 SDPQEDDE >>NP_001265626 (OMIM: 300192,300813) protein SSX2 isofor (214 aa) initn: 1140 init1: 1080 opt: 1082 Z-score: 951.7 bits: 183.0 E(85289): 2.9e-46 Smith-Waterman score: 1229; 87.4% identity (87.4% similar) in 214 aa overlap (1-188:1-214) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSG------------------------ :::::::::::::::::::::::::::::::::::: NP_001 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN 130 140 150 160 170 180 160 170 180 pF1KB8 --PKRGEHAWTHRLPERKQLVIYEEISDPEEDDE :::::::::::: ::::::::::::::::::: NP_001 IGPKRGEHAWTHRLRERKQLVIYEEISDPEEDDE 190 200 210 >>NP_003138 (OMIM: 300192,300813) protein SSX2 isoform a (223 aa) initn: 1137 init1: 1080 opt: 1082 Z-score: 951.5 bits: 183.0 E(85289): 2.9e-46 Smith-Waterman score: 1082; 94.0% identity (97.6% similar) in 167 aa overlap (1-167:1-167) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI :::::::::::::::::::::::::::::::::::: ..... .: NP_003 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN 130 140 150 160 170 180 pF1KB8 SDPEEDDE NP_003 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW 190 200 210 220 >>NP_005627 (OMIM: 300326) protein SSX4 isoform a [Homo (188 aa) initn: 1014 init1: 1014 opt: 1014 Z-score: 893.7 bits: 172.1 E(85289): 4.8e-43 Smith-Waterman score: 1014; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK ::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.::: NP_005 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : ::::::::::: NP_005 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI : .:::::::::::::.:::::.:.: :::.. ::::::.::::::: ::::::.:::: NP_005 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: NP_005 SDPEEDDE >>XP_016885248 (OMIM: 300326) PREDICTED: protein SSX4 is (188 aa) initn: 1014 init1: 1014 opt: 1014 Z-score: 893.7 bits: 172.1 E(85289): 4.8e-43 Smith-Waterman score: 1014; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KB8 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK ::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.::: XP_016 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG ::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : ::::::::::: XP_016 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLPERKQLVIYEEI : .:::::::::::::.:::::.:.: :::.. ::::::.::::::: ::::::.:::: XP_016 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI 130 140 150 160 170 180 pF1KB8 SDPEEDDE :::::::: XP_016 SDPEEDDE 188 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:51:33 2016 done: Fri Nov 4 11:51:34 2016 Total Scan time: 5.020 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]