FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8344, 301 aa 1>>>pF1KB8344 301 - 301 aa - 301 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2927+/-0.000353; mu= 7.1066+/- 0.022 mean_var=146.9395+/-29.266, 0's: 0 Z-trim(118.1): 19 B-trim: 0 in 0/54 Lambda= 0.105805 statistics sampled from 30670 (30685) to 30670 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.36), width: 16 Scan time: 8.140 The best scores are: opt bits E(85289) NP_005379 (OMIM: 604421) phosducin-like protein [H ( 301) 1980 313.6 3.1e-85 XP_016870274 (OMIM: 604421) PREDICTED: phosducin-l ( 236) 1201 194.6 1.6e-49 NP_072098 (OMIM: 171490) phosducin isoform b [Homo ( 194) 641 109.0 7.5e-24 XP_011507905 (OMIM: 171490) PREDICTED: phosducin i ( 246) 641 109.1 9e-24 NP_002588 (OMIM: 171490) phosducin isoform a [Homo ( 246) 641 109.1 9e-24 NP_689614 (OMIM: 611676) phosducin-like protein 2 ( 241) 271 52.6 8.9e-07 XP_011532676 (OMIM: 611676) PREDICTED: phosducin-l ( 209) 265 51.7 1.5e-06 NP_076970 (OMIM: 611678) phosducin-like protein 3 ( 239) 257 50.5 3.9e-06 XP_016860379 (OMIM: 611678) PREDICTED: phosducin-l ( 189) 232 46.6 4.6e-05 >>NP_005379 (OMIM: 604421) phosducin-like protein [Homo (301 aa) initn: 1980 init1: 1980 opt: 1980 Z-score: 1651.2 bits: 313.6 E(85289): 3.1e-85 Smith-Waterman score: 1980; 99.7% identity (100.0% similar) in 301 aa overlap (1-301:1-301) 10 20 30 40 50 60 pF1KB8 MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GVINDWRRFKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GVINDWRRFKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 IVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYK :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: NP_005 IVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVKSSVIGASSQFTRNALPALLIYK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 GGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEI 250 260 270 280 290 300 pF1KB8 D : NP_005 D >>XP_016870274 (OMIM: 604421) PREDICTED: phosducin-like (236 aa) initn: 1199 init1: 1199 opt: 1201 Z-score: 1010.0 bits: 194.6 E(85289): 1.6e-49 Smith-Waterman score: 1201; 82.9% identity (88.6% similar) in 228 aa overlap (81-301:9-236) 60 70 80 90 100 pF1KB8 EGISVNTGPKGVINDWRRFKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQ---- : .. ..: :.. . . : XP_016 MISCWGRNCSTTIAAVRMRTVTTRTRTEADVPQPAVLC 10 20 30 110 120 130 140 150 160 pF1KB8 -KQKDLQEKISG--KMTLKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFE .. . : : : .::::::::::::::::::::::::::::::::::::::::::::: XP_016 LQRLSWQAKASQLTQMTLKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFE 40 50 60 70 80 90 170 180 190 200 210 220 pF1KB8 ISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVESSVIG ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: XP_016 ISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVKSSVIG 100 110 120 130 140 150 230 240 250 260 270 280 pF1KB8 ASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVLT 160 170 180 190 200 210 290 300 pF1KB8 SVRNSATCHSEDSDLEID :::::::::::::::::: XP_016 SVRNSATCHSEDSDLEID 220 230 >>NP_072098 (OMIM: 171490) phosducin isoform b [Homo sap (194 aa) initn: 660 init1: 640 opt: 641 Z-score: 549.2 bits: 109.0 E(85289): 7.5e-24 Smith-Waterman score: 641; 48.6% identity (84.2% similar) in 183 aa overlap (104-286:5-187) 80 90 100 110 120 130 pF1KB8 TEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDD .... :: .:..: ::...:. .......: NP_072 MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKED 10 20 30 140 150 160 170 180 190 pF1KB8 EEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIP :. :..::.: :..:.:.: ::.. :.:. .:. ::. :.:: : .:.:::::::: NP_072 ENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIK 40 50 60 70 80 90 200 210 220 230 240 250 pF1KB8 GTEAMNGCMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELIGNFVRVTD : .:.:. . ::::::: :::::...: ::...:. ..::.::::::::::.::. :.. NP_072 GCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAE 100 110 120 130 140 150 260 270 280 290 300 pF1KB8 QLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID :....::: :.:.::.:.:::::.:: :: .. NP_072 QFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE 160 170 180 190 >>XP_011507905 (OMIM: 171490) PREDICTED: phosducin isofo (246 aa) initn: 753 init1: 640 opt: 641 Z-score: 547.8 bits: 109.1 E(85289): 9e-24 Smith-Waterman score: 733; 45.3% identity (79.2% similar) in 236 aa overlap (51-286:14-239) 30 40 50 60 70 80 pF1KB8 EDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPKGVINDWRRFKQLETEQREEQ :: ...:::::::::::.:: ::... . XP_011 MEEAKSQSLEEDFEGQATHTGPKGVINDWRKFK-LESQDSDSI 10 20 30 40 90 100 110 120 130 140 pF1KB8 CREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDDEEFLQQY .......: .... :: .:..: ::...:. .......::. :..: XP_011 PPSKKEILRQMS---------SPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKY 50 60 70 80 90 150 160 170 180 190 200 pF1KB8 RKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNG :.: :..:.:.: ::.. :.:. .:. ::. :.:: : .:.:::::::: : .:.:. XP_011 RRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNS 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB8 CMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFF . ::::::: :::::...: ::...:. ..::.::::::::::.::. :..:....:: XP_011 SLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFF 160 170 180 190 200 210 270 280 290 300 pF1KB8 AVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID : :.:.::.:.:::::.:: :: .. XP_011 AGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE 220 230 240 >>NP_002588 (OMIM: 171490) phosducin isoform a [Homo sap (246 aa) initn: 753 init1: 640 opt: 641 Z-score: 547.8 bits: 109.1 E(85289): 9e-24 Smith-Waterman score: 733; 45.3% identity (79.2% similar) in 236 aa overlap (51-286:14-239) 30 40 50 60 70 80 pF1KB8 EDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPKGVINDWRRFKQLETEQREEQ :: ...:::::::::::.:: ::... . NP_002 MEEAKSQSLEEDFEGQATHTGPKGVINDWRKFK-LESQDSDSI 10 20 30 40 90 100 110 120 130 140 pF1KB8 CREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDDEEFLQQY .......: .... :: .:..: ::...:. .......::. :..: NP_002 PPSKKEILRQMS---------SPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKY 50 60 70 80 90 150 160 170 180 190 200 pF1KB8 RKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNG :.: :..:.:.: ::.. :.:. .:. ::. :.:: : .:.:::::::: : .:.:. NP_002 RRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNS 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB8 CMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFF . ::::::: :::::...: ::...:. ..::.::::::::::.::. :..:....:: NP_002 SLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFF 160 170 180 190 200 210 270 280 290 300 pF1KB8 AVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID : :.:.::.:.:::::.:: :: .. NP_002 AGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE 220 230 240 >>NP_689614 (OMIM: 611676) phosducin-like protein 2 [Hom (241 aa) initn: 203 init1: 122 opt: 271 Z-score: 242.7 bits: 52.6 E(85289): 8.9e-07 Smith-Waterman score: 271; 29.6% identity (62.9% similar) in 213 aa overlap (100-297:28-232) 70 80 90 100 110 120 pF1KB8 KQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQ--QKQKDLQEKISGKMTLKEFAIM :: ::. . ::. . : :::: .. NP_689 MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLK-E 10 20 30 40 50 130 140 150 160 170 180 pF1KB8 NEDQDDEEFLQQ---YRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIM ::. ::: .: :::.:..: . :.: .: .. ::: :. ... . . .... .. NP_689 AEDEFDEEDMQAVETYRKKRLQEWKA-LKKKQKFGELREIS-GNQYVNEVTNAEEDVWVI 60 70 80 90 100 110 190 200 210 220 230 240 pF1KB8 VHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVESSVIGASSQ-FTRNALPALLIYKGGE .:.:...:: .: . :: ..: .:: : ..... : . : ::....::.:. NP_689 IHLYRSSIPMCLLVNQHLSLLARKFPETKFVK---AIVNSCIQHYHDNCLPTIFVYKNGQ 120 130 140 150 160 170 250 260 270 280 290 pF1KB8 LIGNFVRVTDQLGDDFFAVDLEAFLQEFGLL-------PEKEV--LVLTSVRNSATCHSE . ..:. . . : .. .:: : : : . :.:.. ....:.::.. : . NP_689 IEAKFIGIIECGGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNTSI-H-D 180 190 200 210 220 300 pF1KB8 DSDLEID ::: NP_689 DSDSSNSDNDTK 230 240 >>XP_011532676 (OMIM: 611676) PREDICTED: phosducin-like (209 aa) initn: 219 init1: 119 opt: 265 Z-score: 238.6 bits: 51.7 E(85289): 1.5e-06 Smith-Waterman score: 265; 29.1% identity (63.1% similar) in 203 aa overlap (108-297:6-200) 80 90 100 110 120 130 pF1KB8 EEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDDEEFL ::. . : :::: .. ::. ::: . XP_011 MVLRLQKEAMVKPFEKMTLAQLK-EAEDEFDEEDM 10 20 30 140 150 160 170 180 190 pF1KB8 QQ---YRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPG : :::.:..: . :.: .: .. ::: :. ... . . .... ...:.:...:: XP_011 QAVETYRKKRLQEWKA-LKKKQKFGELREIS-GNQYVNEVTNAEEDVWVIIHLYRSSIPM 40 50 60 70 80 90 200 210 220 230 240 250 pF1KB8 TEAMNGCMICLAAEYPAVKFCKVESSVIGASSQ-FTRNALPALLIYKGGELIGNFVRVTD .: . :: ..: .:: : ..... : . : ::....::.:.. ..:. . . XP_011 CLLVNQHLSLLARKFPETKFVK---AIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIE 100 110 120 130 140 260 270 280 290 300 pF1KB8 QLGDDFFAVDLEAFLQEFGLL-------PEKEV--LVLTSVRNSATCHSEDSDLEID : .. .:: : : : . :.:.. ....:.::. . : .::: XP_011 CGGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNT-SIH-DDSDSSNSDND 150 160 170 180 190 200 XP_011 TK >>NP_076970 (OMIM: 611678) phosducin-like protein 3 [Hom (239 aa) initn: 247 init1: 117 opt: 257 Z-score: 231.2 bits: 50.5 E(85289): 3.9e-06 Smith-Waterman score: 257; 29.3% identity (61.9% similar) in 215 aa overlap (101-301:30-239) 80 90 100 110 120 pF1KB8 QLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGK---MTLKEFAIM ::: ...:. ::... :::.:. NP_076 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDH 10 20 30 40 50 130 140 150 160 170 180 pF1KB8 NED--QDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMV ... ..::. ...::..:. : . :. .: .:.::: :. ... . : ... ... NP_076 EDEFNEEDERAIEMYRRRRLAEWKATKLKN-KFGEVLEIS-GKDYVQEVTKAGEGLWVIL 60 70 80 90 100 110 190 200 210 220 230 240 pF1KB8 HIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELI :.:..::: .: . :: ..: ::: :. :.. . :: ::....: :.. NP_076 HLYKQGIPLCALINQHLSGLARKFPDVKFIKAISTTC-IPNYPDRN-LPTIFVYLEGDIK 120 130 140 150 160 170 250 260 270 280 290 pF1KB8 GNFVRVTDQLGDDFFAVDLEAFLQEFGLL-------PEKEV--LVLTSVRNSATCHSEDS ..:. : .. .:: :.: : . :.: . ..:.::: :. ..:: NP_076 AQFIGPLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVL-MKRDS 180 190 200 210 220 230 300 pF1KB8 DLEID : : : NP_076 DSEGD >>XP_016860379 (OMIM: 611678) PREDICTED: phosducin-like (189 aa) initn: 188 init1: 113 opt: 232 Z-score: 212.0 bits: 46.6 E(85289): 4.6e-05 Smith-Waterman score: 232; 29.4% identity (61.9% similar) in 194 aa overlap (119-301:1-189) 90 100 110 120 130 140 pF1KB8 KKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNED--QDDEEFLQQYRKQRME :::.:. ... ..::. ...::..:. XP_016 MTLEELEDHEDEFNEEDERAIEMYRRRRLA 10 20 30 150 160 170 180 190 200 pF1KB8 EMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLA : . :. .: .:.::: :. ... . : ... ...:.:..::: .: . :: XP_016 EWKATKLKN-KFGEVLEIS-GKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLA 40 50 60 70 80 210 220 230 240 250 260 pF1KB8 AEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEA ..: ::: :. :.. . :: ::....: :.. ..:. : .. .:: XP_016 RKFPDVKFIKAISTTC-IPNYPDRN-LPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEW 90 100 110 120 130 140 270 280 290 300 pF1KB8 FLQEFGLL-------PEKEV--LVLTSVRNSATCHSEDSDLEID :.: : . :.: . ..:.::: :. ..::: : : XP_016 KLSESGAIMTDLEENPKKPIEDVLLSSVRRSVL-MKRDSDSEGD 150 160 170 180 301 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:56:52 2016 done: Fri Nov 4 11:56:53 2016 Total Scan time: 8.140 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]