FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8347, 378 aa 1>>>pF1KB8347 378 - 378 aa - 378 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.9152+/-0.000966; mu= 6.1412+/- 0.058 mean_var=184.4643+/-37.269, 0's: 0 Z-trim(111.6): 17 B-trim: 81 in 1/52 Lambda= 0.094432 statistics sampled from 12496 (12505) to 12496 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.384), width: 16 Scan time: 2.960 The best scores are: opt bits E(32554) CCDS12237.1 CDC37 gene_id:11140|Hs108|chr19 ( 378) 2533 357.2 1.4e-98 CCDS6454.1 CDC37L1 gene_id:55664|Hs108|chr9 ( 337) 747 113.8 2.2e-25 >>CCDS12237.1 CDC37 gene_id:11140|Hs108|chr19 (378 aa) initn: 2533 init1: 2533 opt: 2533 Z-score: 1883.4 bits: 357.2 E(32554): 1.4e-98 Smith-Waterman score: 2533; 99.5% identity (99.5% similar) in 378 aa overlap (1-378:1-378) 10 20 30 40 50 60 pF1KB8 MVDYSVWDHIEVSDDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELDRGCRECKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MVDYSVWDHIEVSDDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELDRGCRECKRK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 VAECQRKLKELEVAEGGKAELERQQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLS ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: CCDS12 VAECQRKLKELEVAEGGKAELERLQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 KDGFSKSMVNTKPEKTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KDGFSKSMVNTKPEKTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 IKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 IKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYES 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 LPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDPGLWVPNSKASEAKEGEEAGPG :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: CCDS12 LPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASEAKEGEEAGPG 310 320 330 340 350 360 370 pF1KB8 DPLLEAVPKTGDEKDVSV :::::::::::::::::: CCDS12 DPLLEAVPKTGDEKDVSV 370 >>CCDS6454.1 CDC37L1 gene_id:55664|Hs108|chr9 (337 aa) initn: 608 init1: 554 opt: 747 Z-score: 569.0 bits: 113.8 E(32554): 2.2e-25 Smith-Waterman score: 747; 44.3% identity (73.7% similar) in 262 aa overlap (44-303:55-304) 20 30 40 50 60 70 pF1KB8 DDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELDRGCRECKRKVAECQRKLKELEV ::.:: . .. :: ..:: :.:: : . CCDS64 DFDVFPSSPRCPQLPGGGAQMYSHGIELACQKQKEFV-KSSVACKWNLAEAQQKLGSLAL 30 40 50 60 70 80 80 90 100 110 120 130 pF1KB8 --AEGGKAELERQQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLSKDGFSKSMVNT .:. : . :. ...::..:. :.:: : . ..:: :..:..::: :.::..: CCDS64 HNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQREKMCLWSTDAISKDVFNKSFINQ 90 100 110 120 130 140 140 150 160 170 180 190 pF1KB8 KPEKTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEETANYLV .: :: :.: ..:..:::..:.::::: ::::::..:::. .:::::::.::. CCDS64 DKRKDTED-----EDKSESFMQKYEQKIRHFGMLSRWDDSQRFLSDHPYLVCEETAKYLI 150 160 170 180 190 200 210 220 230 240 250 pF1KB8 IWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADRQYMEG .::. ::.:.: :::::.:::..:::::.:.::. .::::.::: :: : :. .. :.:. CCDS64 LWCFHLEAEKKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEA 200 210 220 230 240 250 260 270 280 290 300 310 pF1KB8 FNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEELQKCFDV :..:::::: ::: . . . .. .... .:. . . ::::. CCDS64 FKNELEAFKSRVR------LYSQSQSFQPMTVQNHVPHSGVGSIGLLESLPQNPDYLQYS 260 270 280 290 300 310 320 330 340 350 360 370 pF1KB8 KDVQMLQDAISKMDPTDAKYHMQRCIDPGLWVPNSKASEAKEGEEAGPGDPLLEAVPKTG CCDS64 ISTALCSLNSVVHKEDDEPKMMDTV 320 330 378 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:59:31 2016 done: Fri Nov 4 11:59:32 2016 Total Scan time: 2.960 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]