FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8357, 263 aa
  1>>>pF1KB8357 263 - 263 aa - 263 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2566+/-0.000801; mu= 3.1680+/- 0.048
 mean_var=186.6282+/-38.220, 0's: 0 Z-trim(114.9): 4  B-trim: 946 in 1/50
 Lambda= 0.093883
 statistics sampled from 15488 (15492) to 15488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.476), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS173.1 NECAP2 gene_id:55707|Hs108|chr1          ( 263) 1821 258.0   5e-69
CCDS44067.1 NECAP2 gene_id:55707|Hs108|chr1        ( 237) 1604 228.5 3.2e-60
CCDS44066.1 NECAP2 gene_id:55707|Hs108|chr1        ( 273) 1532 218.8 3.1e-57
CCDS8589.1 NECAP1 gene_id:25977|Hs108|chr12        ( 275) 1082 157.9   7e-39


>>CCDS173.1 NECAP2 gene_id:55707|Hs108|chr1               (263 aa)
 initn: 1821 init1: 1821 opt: 1821  Z-score: 1352.8  bits: 258.0 E(32554): 5e-69
Smith-Waterman score: 1821; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KB8 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGAPVPWPQPNPATADIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGAPVPWPQPNPATADIW
              190       200       210       220       230       240

              250       260   
pF1KB8 GDFTKSTGSTSSQTQPGTGWVQF
       :::::::::::::::::::::::
CCDS17 GDFTKSTGSTSSQTQPGTGWVQF
              250       260   

>>CCDS44067.1 NECAP2 gene_id:55707|Hs108|chr1             (237 aa)
 initn: 1622 init1: 1604 opt: 1604  Z-score: 1194.6  bits: 228.5 E(32554): 3.2e-60
Smith-Waterman score: 1604; 100.0% identity (100.0% similar) in 232 aa overlap (32-263:6-237)

              10        20        30        40        50        60 
pF1KB8 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED
                                     ::::::::::::::::::::::::::::::
CCDS44                          MEESGAAEWQLDQPSWSGRLRITAKGQMAYIKLED
                                        10        20        30     

              70        80        90       100       110       120 
pF1KB8 RTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVA
          40        50        60        70        80        90     

             130       140       150       160       170       180 
pF1KB8 LQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPAS
         100       110       120       130       140       150     

             190       200       210       220       230       240 
pF1KB8 TGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGAPVPWPQPNPATADIWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGAPVPWPQPNPATADIWG
         160       170       180       190       200       210     

             250       260   
pF1KB8 DFTKSTGSTSSQTQPGTGWVQF
       ::::::::::::::::::::::
CCDS44 DFTKSTGSTSSQTQPGTGWVQF
         220       230       

>>CCDS44066.1 NECAP2 gene_id:55707|Hs108|chr1             (273 aa)
 initn: 1515 init1: 1515 opt: 1532  Z-score: 1141.0  bits: 218.8 E(32554): 3.1e-57
Smith-Waterman score: 1532; 88.8% identity (92.3% similar) in 260 aa overlap (1-259:1-257)

               10        20        30        40        50        60
pF1KB8 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGAPVPWPQPNPATADIW
       ::::::::::::::::::::::::::::::::::::::::::   :.   .:. : :   
CCDS44 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPA---RPSQAQAGSS
              190       200       210       220          230       

               250       260               
pF1KB8 GDFTKSTGS-TSSQTQPGTGWVQF            
       .:..      ::... :  :                
CCDS44 SDLSTVFPHVTSGKALPHLGQRKEDEALLSWPVFGA
       240       250       260       270   

>>CCDS8589.1 NECAP1 gene_id:25977|Hs108|chr12             (275 aa)
 initn: 1185 init1: 928 opt: 1082  Z-score: 811.5  bits: 157.9 E(32554): 7e-39
Smith-Waterman score: 1160; 62.3% identity (82.8% similar) in 273 aa overlap (6-263:7-275)

                10        20        30        40        50         
pF1KB8  MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKL
             ::::::::::: ::::::::.::::::..:.::::.:.::::::.::. :::::
CCDS85 MATELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKL
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 EDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFN
       ::..::::::::::.:.:: :::.::::::::::::.::.:: ::::::: :::::::::
CCDS85 EDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 VALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRP
       :.::::::::::. :..:..:. :  ::::::::::::::: :.:. .:.:.:..::.  
CCDS85 VSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPRT--
              130       140       150       160       170          

     180       190       200       210       220                   
pF1KB8 ASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGG-------------AP
       :  :::::::::::::..  ::::. ..:... .. : .  :. :             ::
CCDS85 ARGGGLSLLPPPPGGKVT--IPPPSSSVAISNHVTPPPIPKSNHGGSDADILLDLDSPAP
      180       190         200       210       220       230      

        230         240       250       260   
pF1KB8 VPWPQPNPATA--DIWGDFTKSTGSTSSQTQPGTGWVQF
       :  : :.:...  :.::::. ...:. .:.   ..::::
CCDS85 VTTPAPTPVSVSNDLWGDFSTASSSVPNQAPQPSNWVQF
        240       250       260       270     




263 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:04:27 2016 done: Fri Nov  4 12:04:27 2016
 Total Scan time:  2.080 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]