FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8360, 168 aa
  1>>>pF1KB8360 168 - 168 aa - 168 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5254+/-0.000675; mu= 12.4330+/- 0.041
 mean_var=82.0891+/-15.685, 0's: 0 Z-trim(111.8): 12  B-trim: 0 in 0/51
 Lambda= 0.141557
 statistics sampled from 12652 (12661) to 12652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.389), width:  16
 Scan time:  1.340

The best scores are:                                      opt bits E(32554)
CCDS5844.1 PTN gene_id:5764|Hs108|chr7             ( 168) 1167 247.0 4.1e-66
CCDS7919.1 MDK gene_id:4192|Hs108|chr11            ( 143)  509 112.6   1e-25


>>CCDS5844.1 PTN gene_id:5764|Hs108|chr7                  (168 aa)
 initn: 1167 init1: 1167 opt: 1167  Z-score: 1300.4  bits: 247.0 E(32554): 4.1e-66
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
              130       140       150       160        

>>CCDS7919.1 MDK gene_id:4192|Hs108|chr11                 (143 aa)
 initn: 538 init1: 333 opt: 509  Z-score: 575.2  bits: 112.6 E(32554): 1e-25
Smith-Waterman score: 509; 48.4% identity (72.5% similar) in 153 aa overlap (9-161:2-142)

               10        20        30        40        50        60
pF1KB8 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG
               :.: :   .:  .. : :. .: : ::.: .:    :.:.:: :. :.:.: 
CCDS79        MQHRGF---LLLTLLALLALTSAVAKKKDKVKKGGPGSECAEWAWGPCTPSSK
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB8 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
       :::.: ::::  ::   ::..  ::..::::::.:::.:::.:. :: :: .:. :.: :
CCDS79 DCGVGFREGT-CGA---QTQRI-RCRVPCNWKKEFGADCKYKFENWGACDGGTGTKVRQG
               60             70        80        90       100     

              130       140       150       160        
pF1KB8 SLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD
       .::.: .::.::.:. ..:::     :: .:..: :: .::       
CCDS79 TLKKARYNAQCQETIRVTKPC----TPKTKAKAKAKKGKGKD      
         110       120           130       140         




168 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:06:44 2016 done: Fri Nov  4 12:06:44 2016
 Total Scan time:  1.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]