Restriction map for
pF1KB8361
(Circular) (Six-base) MAPSORT of: pF1KB8361.seq Check: 3547 from: 1 to: 3545
pF1KB8361 3545 bp
With 182 enzymes: SgfI *
June 20, 2008 10:28 ..
AccI GT'mk_AC
Cuts at: 583 583
Size: 3545
Acc65I G'GTAC_C
Cuts at: 561 561
Size: 3545
AclI AA'CG_TT
Cuts at: 3385 3385
Size: 3545
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1370 1802 2549 2817 1370
Size: 432 747 268 2098
Fragments arranged by size:
2098 747 432 268
AflIII A'CryG_T
Cuts at: 897 2001 2978 897
Size: 1104 977 1464
Fragments arranged by size:
1464 1104 977
AgeI A'CCGG_T
Cuts at: 1933 1933
Size: 3545
AlwNI CAG_nnn'CTG
Cuts at: 850 2417 850
Size: 1567 1978
ApaLI G'TGCA_C
Cuts at: 2315 2315
Size: 3545
ApoI r'AATT_y
Cuts at: 168 177 352 549 2898 3154 168
Size: 9 175 197 2349 256 559
Fragments arranged by size:
2349 559 256 197 175 9
AseI AT'TA_AT
Cuts at: 20 20
Size: 3545
AsiSI GCG_AT'CGC
Cuts at: 104 104
Size: 3545
AvaI C'yCGr_G
Cuts at: 378 565 378
Size: 187 3358
BamHI G'GATC_C
Cuts at: 268 570 268
Size: 302 3243
BanI G'GyrC_C
Cuts at: 346 561 975 1223 1258 346
Size: 215 414 248 35 2633
Fragments arranged by size:
2633 414 248 215 35
BanII G_rGCy'C
Cuts at: 559 1589 559
Size: 1030 2515
BbeI G_GCGC'C
Cuts at: 979 1227 979
Size: 248 3297
BbsI GAAGACnn'nnnn_
Cuts at: 118 118
Size: 3545
BciVI GTATCCnnnnn_n'
Cuts at: 1443 2204 3545 1443
Size: 761 1341 1443
Fragments arranged by size:
1443 1341 761
BclI T'GATC_A
Cuts at: 134 191 1065 134
Size: 57 874 2614
Fragments arranged by size:
2614 874 57
BglI GCCn_nnn'nGGC
Cuts at: 251 251
Size: 3545
BglII A'GATC_T
Cuts at: 1060 3097 1060
Size: 2037 1508
BlpI GC'TnA_GC
Cuts at: 657 657
Size: 3545
Bme1580I G_kGCm'C
Cuts at: 1170 1263 2319 1170
Size: 93 1056 2396
Fragments arranged by size:
2396 1056 93
BmrI ACTGGGnnnn_n'
Cuts at: 757 838 1173 3317 757
Size: 81 335 2144 985
Fragments arranged by size:
2144 985 335 81
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 548 1912 548
Size: 1364 2181
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 349 349
Size: 3545
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 721 1600 2092 2390 721
Size: 879 492 298 1876
Fragments arranged by size:
1876 879 492 298
BsaI GGTCTCn'nnnn_
Cuts at: 3249 3249
Size: 3545
BsaAI yAC'GTr
Cuts at: 898 898
Size: 3545
BsaBI GATnn'nnATC
Cuts at: 6 139 1059 3096 6
Size: 133 920 2037 455
Fragments arranged by size:
2037 920 455 133
BsaHI Gr'CG_yC
Cuts at: 976 1224 1926 3422 976
Size: 248 702 1496 1099
Fragments arranged by size:
1496 1099 702 248
BsaWI w'CCGG_w
Cuts at: 734 1255 1933 2207 2354 2765 734
Size: 521 678 274 147 411 1514
Fragments arranged by size:
1514 678 521 411 274 147
BseYI C'CCAG_C
Cuts at: 970 1728 2305 2801 970
Size: 758 577 496 1714
Fragments arranged by size:
1714 758 577 496
BsiEI CG_ry'CG
Cuts at: 104 1087 1133 2341 104
Size: 983 46 1208 1308
Fragments arranged by size:
1308 1208 983 46
BsiHKAI G_wGCw'C
Cuts at: 529 559 1337 1527 2319 529
Size: 30 778 190 792 1755
Fragments arranged by size:
1755 792 778 190 30
Bsp1286I G_dGCh'C
Cuts at: 529 559 1170 1263 1337 1527 1589 2319 529
Size: 30 611 93 74 190 62 730 1755
Fragments arranged by size:
1755 730 611 190 93 74 62 30
BspEI T'CCGG_A
Cuts at: 2765 2765
Size: 3545
BspHI T'CATG_A
Cuts at: 137 306 2721 137
Size: 169 2415 961
Fragments arranged by size:
2415 961 169
BspMI ACCTGCnnnn'nnnn_
Cuts at: 595 809 1111 1492 595
Size: 214 302 381 2648
Fragments arranged by size:
2648 381 302 214
BsrBI CCG'CTC
Cuts at: 50 1837 1891 3375 3540 50
Size: 1787 54 1484 165 55
Fragments arranged by size:
1787 1484 165 55 54
BsrDI GCAATG_nn'
Cuts at: 1457 1457
Size: 3545
BsrFI r'CCGG_y
Cuts at: 1543 1724 1933 1543
Size: 181 209 3155
Fragments arranged by size:
3155 209 181
BssSI C'ACGA_G
Cuts at: 1816 2174 1816
Size: 358 3187
BstAPI GCAn_nnn'nTGC
Cuts at: 922 922
Size: 3545
BstBI TT'CG_AA
Cuts at: 1906 1906
Size: 3545
BstYI r'GATC_y
Cuts at: 1 268 570 1037 1060 1395 1641 2653 2739
Size: 267 302 467 23 335 246 1012 86
Cuts at: 2739 2751 3097 1
Size: 12 346 449
Fragments arranged by size:
1012 467 449 346 335 302 267 246
86 23 12
BtgI C'CryG_G
Cuts at: 162 162
Size: 3545
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 1495 1676 1839 1495
Size: 181 163 3201
Fragments arranged by size:
3201 181 163
BtsI GCAGTG_nn'
Cuts at: 137 513 788 137
Size: 376 275 2894
Fragments arranged by size:
2894 376 275
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 441 476 441
Size: 35 3510
DraI TTT'AAA
Cuts at: 544 544
Size: 3545
DrdI GACnn_nn'nnGTC
Cuts at: 1251 2109 1251
Size: 858 2687
EaeI y'GGCC_r
Cuts at: 1130 1304 1695 1722 3067 1130
Size: 174 391 27 1345 1608
Fragments arranged by size:
1608 1345 391 174 27
EagI C'GGCC_G
Cuts at: 1130 1130
Size: 3545
EarI CTCTTCn'nnn_
Cuts at: 1568 1778 1568
Size: 210 3335
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 1753 2063 2209 3355 1753
Size: 310 146 1146 1943
Fragments arranged by size:
1943 1146 310 146
EcoICRI GAG'CTC
Cuts at: 557 557
Size: 3545
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 349 1370 1802 2549 2817 349
Size: 1021 432 747 268 1077
Fragments arranged by size:
1077 1021 747 432 268
EcoNI CCTnn'n_nnAGG
Cuts at: 154 154
Size: 3545
EcoO109I rG'GnC_Cy
Cuts at: 684 684
Size: 3545
EcoRI G'AATT_C
Cuts at: 549 549
Size: 3545
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 1564 1564
Size: 3545
FspI TGC'GCA
Cuts at: 1326 1326
Size: 3545
HaeII r_GCGC'y
Cuts at: 979 1227 2249 3228 979
Size: 248 1022 979 1296
Fragments arranged by size:
1296 1022 979 248
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1387 1417 1419 1449 1387
Size: 30 2 30 3483
Fragments arranged by size:
3483 30 30 2
HincII GTy'rAC
Cuts at: 200 424 584 200
Size: 224 160 3161
Fragments arranged by size:
3161 224 160
KasI G'GCGC_C
Cuts at: 975 1223 975
Size: 248 3297
KpnI G_GTAC'C
Cuts at: 565 565
Size: 3545
MluI A'CGCG_T
Cuts at: 2978 2978
Size: 3545
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 2216 2400 2216
Size: 184 3361
MscI TGG'CCA
Cuts at: 1306 1306
Size: 3545
MslI CAynn'nnrTG
Cuts at: 1534 1661 1534
Size: 127 3418
MspA1I CmG'CkG
Cuts at: 656 970 1330 2343 2588 656
Size: 314 360 1013 245 1613
Fragments arranged by size:
1613 1013 360 314 245
NaeI GCC'GGC
Cuts at: 1726 1726
Size: 3545
NarI GG'CG_CC
Cuts at: 976 1224 976
Size: 248 3297
NcoI C'CATG_G
Cuts at: 162 162
Size: 3545
NgoMIV G'CCGG_C
Cuts at: 1724 1724
Size: 3545
NspI r_CATG'y
Cuts at: 598 1098 2005 598
Size: 500 907 2138
Fragments arranged by size:
2138 907 500
PciI A'CATG_T
Cuts at: 2001 2001
Size: 3545
PmeI GTTT'AAAC
Cuts at: 544 544
Size: 3545
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2684 2716 2684
Size: 32 3513
PstI C_TGCA'G
Cuts at: 158 418 520 592 1277 158
Size: 260 102 72 685 2426
Fragments arranged by size:
2426 685 260 102 72
PvuI CG_AT'CG
Cuts at: 104 104
Size: 3545
PvuII CAG'CTG
Cuts at: 970 1330 970
Size: 360 3185
RsrII CG'GwC_CG
Cuts at: 1740 1740
Size: 3545
SacI G_AGCT'C
Cuts at: 559 559
Size: 3545
SalI G'TCGA_C
Cuts at: 582 582
Size: 3545
SapI GCTCTTCn'nnn_
Cuts at: 1568 1778 1568
Size: 210 3335
SbfI CC_TGCA'GG
Cuts at: 592 592
Size: 3545
ScaI AGT'ACT
Cuts at: 499 3062 499
Size: 2563 982
SfcI C'TryA_G
Cuts at: 33 154 414 516 588 1273 2266 2457 33
Size: 121 260 102 72 685 993 191 1121
Fragments arranged by size:
1121 993 685 260 191 121 102 72
SfoI GGC'GCC
Cuts at: 977 1225 977
Size: 248 3297
SgfI GCG_AT'CGC
Cuts at: 104 104
Size: 3545
SmaI CCC'GGG
Cuts at: 567 567
Size: 3545
SmlI C'TyrA_G
Cuts at: 700 1615 2107 2369 700
Size: 915 492 262 1876
Fragments arranged by size:
1876 915 492 262
SpeI A'CTAG_T
Cuts at: 67 67
Size: 3545
SphI G_CATG'C
Cuts at: 598 1098 598
Size: 500 3045
StyI C'CwwG_G
Cuts at: 162 275 679 1033 162
Size: 113 404 354 2674
Fragments arranged by size:
2674 404 354 113
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 247 1128 1261 1720 1929 247
Size: 881 133 459 209 1863
Fragments arranged by size:
1863 881 459 209 133
TatI w'GTAC_w
Cuts at: 497 3060 497
Size: 2563 982
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 3062 3094 3062
Size: 32 3513
Tth111I GACn'n_nGTC
Cuts at: 1342 1342
Size: 3545
XbaI T'CTAG_A
Cuts at: 576 576
Size: 3545
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 1040 1040
Size: 3545
XmaI C'CCGG_G
Cuts at: 565 565
Size: 3545
Enzymes that do cut:
AccI Acc65I AclI AcuI AflIII AgeI AlwNI ApaLI
ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI
BbsI BciVI BclI BglI BglII BlpI Bme1580I BmrI
BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BseYI BsiEI BsiHKAI Bsp1286I BspEI BspHI BspMI BsrBI
BsrDI BsrFI BssSI BstAPI BstBI BstYI BtgI BtgZI
BtsI CspCI DraI DrdI EaeI EagI EarI EciI
EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII
Hin4I HincII KasI KpnI MluI MmeI MscI MslI
MspA1I NaeI NarI NcoI NgoMIV NspI PciI PmeI
PpiI PstI PvuI PvuII RsrII SacI SalI SapI
SbfI ScaI SfcI SfoI SgfI SmaI SmlI SpeI
SphI StyI TaqII TatI TstI Tth111I XbaI XcmI
XmaI
Enzymes that do not cut:
AarI AatII AfeI AflII AhdI AleI AlfI AloI
ApaI AscI AvrII BaeI BbvCI BcgI BfrBI BmgBI
BmtI Bpu10I BsaXI BseRI BsgI BsiWI BsmI BsmBI
BsrGI BssHII BstEII BstXI BstZ17I Bsu36I ClaI DraIII
EcoRV FseI FspAI HindIII HpaI MfeI NdeI NheI
NotI NruI NsiI PacI PasI PflMI PfoI PmlI
PpuMI PshAI PsiI PspOMI PspXI PsrI SacII SanDI
SexAI SfiI SgrAI SnaBI SrfI SspI StuI SwaI
XhoI XmnI ZraI