Result of FASTA (omim) for
pF1KB8370
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8370, 161 aa
1>>>pF1KB8370 161 - 161 aa - 161 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0087+/-0.000241; mu= 0.9733+/- 0.015
mean_var=141.0478+/-28.165, 0's: 0 Z-trim(125.5): 19 B-trim: 0 in 0/61
Lambda= 0.107992
statistics sampled from 49385 (49404) to 49385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.865), E-opt: 0.2 (0.579), width: 16
Scan time: 6.440
The best scores are: opt bits E(85289)
NP_001184069 (OMIM: 611453) dysbindin domain-conta ( 161) 1080 178.1 5.6e-45
NP_001184068 (OMIM: 611453) dysbindin domain-conta ( 161) 1080 178.1 5.6e-45
NP_001041688 (OMIM: 611453) dysbindin domain-conta ( 161) 1080 178.1 5.6e-45
NP_001041686 (OMIM: 611453) dysbindin domain-conta ( 161) 1080 178.1 5.6e-45
NP_060948 (OMIM: 611453) dysbindin domain-containi ( 259) 1080 178.1 8.4e-45
NP_001041690 (OMIM: 611453) dysbindin domain-conta ( 263) 1080 178.1 8.5e-45
NP_001041687 (OMIM: 611453) dysbindin domain-conta ( 112) 645 110.2 1e-24
NP_001041689 (OMIM: 611453) dysbindin domain-conta ( 112) 645 110.2 1e-24
NP_001041691 (OMIM: 611453) dysbindin domain-conta ( 214) 645 110.3 1.8e-24
XP_011513239 (OMIM: 181500,607145,614076) PREDICTE ( 195) 344 63.4 2.2e-10
XP_016866838 (OMIM: 181500,607145,614076) PREDICTE ( 200) 344 63.4 2.2e-10
XP_016866837 (OMIM: 181500,607145,614076) PREDICTE ( 201) 344 63.4 2.2e-10
NP_001258596 (OMIM: 181500,607145,614076) dysbindi ( 270) 344 63.5 2.9e-10
NP_001258598 (OMIM: 181500,607145,614076) dysbindi ( 316) 344 63.5 3.3e-10
XP_011513238 (OMIM: 181500,607145,614076) PREDICTE ( 321) 344 63.5 3.3e-10
NP_001258597 (OMIM: 181500,607145,614076) dysbindi ( 334) 344 63.5 3.4e-10
XP_005249504 (OMIM: 181500,607145,614076) PREDICTE ( 338) 344 63.5 3.5e-10
NP_115498 (OMIM: 181500,607145,614076) dysbindin i ( 351) 344 63.5 3.6e-10
NP_898861 (OMIM: 181500,607145,614076) dysbindin i ( 303) 260 50.4 2.8e-06
>>NP_001184069 (OMIM: 611453) dysbindin domain-containin (161 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 928.5 bits: 178.1 E(85289): 5.6e-45
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGVDNHLEELSLPVPTSDRTTSRTSSSSS
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS
70 80 90 100 110 120
130 140 150 160
pF1KB8 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
:::::::::::::::::::::::::::::::::::::::::
NP_001 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
130 140 150 160
>>NP_001184068 (OMIM: 611453) dysbindin domain-containin (161 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 928.5 bits: 178.1 E(85289): 5.6e-45
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGVDNHLEELSLPVPTSDRTTSRTSSSSS
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS
70 80 90 100 110 120
130 140 150 160
pF1KB8 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
:::::::::::::::::::::::::::::::::::::::::
NP_001 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
130 140 150 160
>>NP_001041688 (OMIM: 611453) dysbindin domain-containin (161 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 928.5 bits: 178.1 E(85289): 5.6e-45
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGVDNHLEELSLPVPTSDRTTSRTSSSSS
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS
70 80 90 100 110 120
130 140 150 160
pF1KB8 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
:::::::::::::::::::::::::::::::::::::::::
NP_001 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
130 140 150 160
>>NP_001041686 (OMIM: 611453) dysbindin domain-containin (161 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 928.5 bits: 178.1 E(85289): 5.6e-45
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGVDNHLEELSLPVPTSDRTTSRTSSSSS
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSS
70 80 90 100 110 120
130 140 150 160
pF1KB8 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
:::::::::::::::::::::::::::::::::::::::::
NP_001 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
130 140 150 160
>>NP_060948 (OMIM: 611453) dysbindin domain-containing p (259 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 925.3 bits: 178.1 E(85289): 8.4e-45
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:99-259)
10 20 30
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPE
::::::::::::::::::::::::::::::
NP_060 QWGAPSPGPLCLLFRLCSCTCFAPLPAGADMDPNPRAALERQQLRLRERQKFFEDILQPE
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB8 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB8 SSGVDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
190 200 210 220 230 240
160
pF1KB8 GDGGAEPGACS
:::::::::::
NP_060 GDGGAEPGACS
250
>>NP_001041690 (OMIM: 611453) dysbindin domain-containin (263 aa)
initn: 1080 init1: 1080 opt: 1080 Z-score: 925.2 bits: 178.1 E(85289): 8.5e-45
Smith-Waterman score: 1080; 99.4% identity (100.0% similar) in 161 aa overlap (1-161:103-263)
10 20 30
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPE
::::::::::::::::::::::::::::::
NP_001 QWGAPSPGPLCLLFRLCSCTCFAPLPAGADMDPNPRAALERQQLRLRERQKFFEDILQPE
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB8 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB8 SSGVDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
200 210 220 230 240 250
160
pF1KB8 GDGGAEPGACS
:::::::::::
NP_001 GDGGAEPGACS
260
>>NP_001041687 (OMIM: 611453) dysbindin domain-containin (112 aa)
initn: 637 init1: 637 opt: 645 Z-score: 564.7 bits: 110.2 E(85289): 1e-24
Smith-Waterman score: 645; 88.1% identity (91.7% similar) in 109 aa overlap (1-109:1-109)
10 20 30 40 50 60
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGVDNHLEELSLPVPTSDRTTSRTSSSSS
:::::::::::::::::::::::::::::::::. . ..: : :
NP_001 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL
70 80 90 100 110
130 140 150 160
pF1KB8 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
>>NP_001041689 (OMIM: 611453) dysbindin domain-containin (112 aa)
initn: 637 init1: 637 opt: 645 Z-score: 564.7 bits: 110.2 E(85289): 1e-24
Smith-Waterman score: 645; 88.1% identity (91.7% similar) in 109 aa overlap (1-109:1-109)
10 20 30 40 50 60
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGVDNHLEELSLPVPTSDRTTSRTSSSSS
:::::::::::::::::::::::::::::::::. . ..: : :
NP_001 TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL
70 80 90 100 110
130 140 150 160
pF1KB8 SDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGGAEPGACS
>>NP_001041691 (OMIM: 611453) dysbindin domain-containin (214 aa)
initn: 637 init1: 637 opt: 645 Z-score: 560.3 bits: 110.3 E(85289): 1.8e-24
Smith-Waterman score: 645; 88.1% identity (91.7% similar) in 109 aa overlap (1-109:103-211)
10 20 30
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPE
::::::::::::::::::::::::::::::
NP_001 QWGAPSPGPLCLLFRLCSCTCFAPLPAGADMDPNPRAALERQQLRLRERQKFFEDILQPE
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB8 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQ
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB8 SSGVDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEER
:::. . ..: : :
NP_001 SSGMPLCFGDFSASQPEPDVRL
200 210
>>XP_011513239 (OMIM: 181500,607145,614076) PREDICTED: d (195 aa)
initn: 347 init1: 253 opt: 344 Z-score: 307.5 bits: 63.4 E(85289): 2.2e-10
Smith-Waterman score: 344; 42.6% identity (68.9% similar) in 148 aa overlap (12-152:32-173)
10 20 30 40
pF1KB8 MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLH
::..:.:::::::. .: . : . ..:.
XP_011 SSPGLTENSQRDPSELDAEHAQKVLEMEHTQQMKLKERQKFFEEAFQQDMEQYLSTGYLQ
10 20 30 40 50 60
50 60 70 80 90
pF1KB8 LESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPC--ED-----PPPTPQSSGV
. .: ::::.:::::::: :::..:.:..: .: :::: :. : :.::
XP_011 IAERREPIGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEENTVLSPALGPESSTC
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 DNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTPLAQSDEEEERGDGG
.:.. :..: :. :. .:::. .::.: : .:...:..:::::: . :
XP_011 QNEIT-LQVPNPSELRAKPPSSSSTCTDSATRDIS-----EGGESPVVQSDEEEVQVDTA
130 140 150 160 170
160
pF1KB8 AEPGACS
XP_011 LATSHTDREATPDGGEDSDS
180 190
161 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:19:40 2016 done: Fri Nov 4 12:19:41 2016
Total Scan time: 6.440 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]