FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8372, 165 aa
  1>>>pF1KB8372 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2534+/-0.000585; mu= 12.2333+/- 0.035
 mean_var=55.5084+/-10.598, 0's: 0 Z-trim(111.6): 10  B-trim: 0 in 0/51
 Lambda= 0.172145
 statistics sampled from 12478 (12486) to 12478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.384), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS640.1 GADD45A gene_id:1647|Hs108|chr1          ( 165) 1103 281.2   2e-76
CCDS55605.1 GADD45A gene_id:1647|Hs108|chr1        ( 131)  812 208.9 9.3e-55
CCDS32868.1 GADD45B gene_id:4616|Hs108|chr19       ( 160)  607 158.0 2.4e-39
CCDS6686.1 GADD45G gene_id:10912|Hs108|chr9        ( 159)  583 152.0 1.5e-37
CCDS72806.1 GADD45A gene_id:1647|Hs108|chr1        (  60)  291 79.4 4.1e-16


>>CCDS640.1 GADD45A gene_id:1647|Hs108|chr1               (165 aa)
 initn: 1103 init1: 1103 opt: 1103  Z-score: 1485.5  bits: 281.2 E(32554): 2e-76
Smith-Waterman score: 1103; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KB8 MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPP
               70        80        90       100       110       120

              130       140       150       160     
pF1KB8 DLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER
              130       140       150       160     

>>CCDS55605.1 GADD45A gene_id:1647|Hs108|chr1             (131 aa)
 initn: 883 init1: 812 opt: 812  Z-score: 1096.6  bits: 208.9 E(32554): 9.3e-55
Smith-Waterman score: 818; 78.8% identity (78.8% similar) in 165 aa overlap (1-165:1-131)

               10        20        30        40        50        60
pF1KB8 MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLA
       ::::::::::::::                                   :::::::::::
CCDS55 MTLEEFSAGEQKTES----------------------------------DPDNVVLCLLA
               10                                          20      

               70        80        90       100       110       120
pF1KB8 ADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPP
         30        40        50        60        70        80      

              130       140       150       160     
pF1KB8 DLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER
         90       100       110       120       130 

>>CCDS32868.1 GADD45B gene_id:4616|Hs108|chr19            (160 aa)
 initn: 616 init1: 413 opt: 607  Z-score: 820.0  bits: 158.0 E(32554): 2.4e-39
Smith-Waterman score: 607; 55.8% identity (78.8% similar) in 165 aa overlap (1-165:1-160)

               10        20        30        40        50        60
pF1KB8 MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLA
       :::::. : .. ...:. :  :.::.:  :  :  .::::::.:::.:::::.:::::::
CCDS32 MTLEELVACDNAAQKMQTVTAAVEELLVAAQRQDRLTVGVYESAKLMNVDPDSVVLCLLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPP
        ::... :.::::::::::.:::.:::::.:::.  :::.::     . :: ..:. .  
CCDS32 IDEEEEDDIALQIHFTLIQSFCCDNDINIVRVSGMQRLAQLL-----GEPAETQGTTEAR
               70        80        90       100            110     

              130       140       150       160     
pF1KB8 DLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER
       ::::.::::::.. ::. .: ..  .:.:::  .:::: :.: ::
CCDS32 DLHCLLVTNPHTDAWKSHGLVEVASYCEESRGNNQWVPYISLQER
         120       130       140       150       160

>>CCDS6686.1 GADD45G gene_id:10912|Hs108|chr9             (159 aa)
 initn: 375 init1: 375 opt: 583  Z-score: 787.8  bits: 152.0 E(32554): 1.5e-37
Smith-Waterman score: 583; 54.5% identity (77.2% similar) in 167 aa overlap (1-164:1-159)

               10           20        30        40        50       
pF1KB8 MTLEEFSAGE---QKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLC
       :::::  . .   ..: ::. .: ::.:.: .:  :  .:.::::.::.::::::::..:
CCDS66 MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB8 LLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAE
       .::: :.:. :.::::::::::::::::::.:.::..  ::: ..        .:.: : 
CCDS66 VLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIV--------GAGEEAG
               70        80        90       100               110  

       120       130       140       150       160     
pF1KB8 QPPDLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER
        : ::::.:..::. . :::::: .:  ::.::: ...::: :.::: 
CCDS66 APGDLHCILISNPNEDAWKDPALEKLSLFCEESRSVNDWVPSITLPE 
            120       130       140       150          

>>CCDS72806.1 GADD45A gene_id:1647|Hs108|chr1             (60 aa)
 initn: 291 init1: 291 opt: 291  Z-score: 402.8  bits: 79.4 E(32554): 4.1e-16
Smith-Waterman score: 291; 100.0% identity (100.0% similar) in 49 aa overlap (1-49:1-49)

               10        20        30        40        50        60
pF1KB8 MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLA
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS72 MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVIHIHLNGRILP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPP




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:20:12 2016 done: Fri Nov  4 12:20:13 2016
 Total Scan time:  1.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]